miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 3' -56.5 NC_005264.1 + 66201 0.68 0.779343
Target:  5'- gGCGGGCGGUgcgCCUccgcggccagcgaaGGACuuGGCGAGCUg -3'
miRNA:   3'- aUGCCCGUUA---GGA--------------CCUG--CUGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 45274 0.68 0.782122
Target:  5'- -uCGGGCuGUCCcuugucgaacgUGGACGGCaccuGGCUCa -3'
miRNA:   3'- auGCCCGuUAGG-----------ACCUGCUGc---UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 148674 0.68 0.782122
Target:  5'- -cCGaGGCGAgaaauagCCUGGuuGGCGAGCUg -3'
miRNA:   3'- auGC-CCGUUa------GGACCugCUGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 22769 0.68 0.791296
Target:  5'- gGCGGGCAAUgagGGgcGCGGCGAcacuGCUCa -3'
miRNA:   3'- aUGCCCGUUAggaCC--UGCUGCU----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 15144 0.68 0.800326
Target:  5'- cACGGGCAAUCgCguuGCGGCGAuGCUg -3'
miRNA:   3'- aUGCCCGUUAG-GaccUGCUGCU-CGAg -5'
24348 3' -56.5 NC_005264.1 + 100201 0.68 0.800326
Target:  5'- cGCGuGCugcgCUUGGACGGCGGGCg- -3'
miRNA:   3'- aUGCcCGuua-GGACCUGCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 71539 0.67 0.817921
Target:  5'- gUACGGGCAucgcCCUGG-UGACaGAGUUg -3'
miRNA:   3'- -AUGCCCGUua--GGACCuGCUG-CUCGAg -5'
24348 3' -56.5 NC_005264.1 + 76345 0.67 0.83484
Target:  5'- cAUGGGCG---CUGGAgGGCGAGCc- -3'
miRNA:   3'- aUGCCCGUuagGACCUgCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 54417 0.67 0.83484
Target:  5'- uUGCGcGGCGcgCCgacuaGGGCGugGGGUUg -3'
miRNA:   3'- -AUGC-CCGUuaGGa----CCUGCugCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 49596 0.67 0.843027
Target:  5'- cGCcGGCGA-CCaGGACGACGGggggcGCUCg -3'
miRNA:   3'- aUGcCCGUUaGGaCCUGCUGCU-----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 13243 0.67 0.850231
Target:  5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3'
miRNA:   3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5'
24348 3' -56.5 NC_005264.1 + 132270 0.67 0.850231
Target:  5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3'
miRNA:   3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5'
24348 3' -56.5 NC_005264.1 + 3330 0.67 0.851021
Target:  5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3'
miRNA:   3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 122357 0.67 0.851021
Target:  5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3'
miRNA:   3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 19025 0.67 0.858817
Target:  5'- aGCGGGCGuga-UGGACGGCaGGCg- -3'
miRNA:   3'- aUGCCCGUuaggACCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 41591 0.67 0.858817
Target:  5'- gACGuGGC-GUCUaaacaUGGGCccgcuGACGAGCUCg -3'
miRNA:   3'- aUGC-CCGuUAGG-----ACCUG-----CUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 80756 0.66 0.865659
Target:  5'- --gGGGaCAAUCCUcGGCGGCGAagaucuuguccgcGCUCu -3'
miRNA:   3'- augCCC-GUUAGGAcCUGCUGCU-------------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 89547 0.66 0.866408
Target:  5'- cGCGGGCAG---UGucCGGCGAGCUUu -3'
miRNA:   3'- aUGCCCGUUaggACcuGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 85449 0.66 0.873788
Target:  5'- aUGCGGGCcGgcccuggaacUCCUuacGGGCGACGcGCUa -3'
miRNA:   3'- -AUGCCCGuU----------AGGA---CCUGCUGCuCGAg -5'
24348 3' -56.5 NC_005264.1 + 119117 0.66 0.880951
Target:  5'- gGCGGGCucugCUgggGGAgGGCGAGgaCg -3'
miRNA:   3'- aUGCCCGuua-GGa--CCUgCUGCUCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.