miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 3' -56.5 NC_005264.1 + 49596 0.67 0.843027
Target:  5'- cGCcGGCGA-CCaGGACGACGGggggcGCUCg -3'
miRNA:   3'- aUGcCCGUUaGGaCCUGCUGCU-----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 54417 0.67 0.83484
Target:  5'- uUGCGcGGCGcgCCgacuaGGGCGugGGGUUg -3'
miRNA:   3'- -AUGC-CCGUuaGGa----CCUGCugCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 61824 0.66 0.880951
Target:  5'- -cCGGGCAGUgCCUGGcucgccugcgccGCGuACGGGUUg -3'
miRNA:   3'- auGCCCGUUA-GGACC------------UGC-UGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 66201 0.68 0.779343
Target:  5'- gGCGGGCGGUgcgCCUccgcggccagcgaaGGACuuGGCGAGCUg -3'
miRNA:   3'- aUGCCCGUUA---GGA--------------CCUG--CUGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 66497 0.66 0.880951
Target:  5'- gGCGGGCugcgc-GGcgcgcuCGACGAGCUCg -3'
miRNA:   3'- aUGCCCGuuaggaCCu-----GCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 71539 0.67 0.817921
Target:  5'- gUACGGGCAucgcCCUGG-UGACaGAGUUg -3'
miRNA:   3'- -AUGCCCGUua--GGACCuGCUG-CUCGAg -5'
24348 3' -56.5 NC_005264.1 + 76345 0.67 0.83484
Target:  5'- cAUGGGCG---CUGGAgGGCGAGCc- -3'
miRNA:   3'- aUGCCCGUuagGACCUgCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 80756 0.66 0.865659
Target:  5'- --gGGGaCAAUCCUcGGCGGCGAagaucuuguccgcGCUCu -3'
miRNA:   3'- augCCC-GUUAGGAcCUGCUGCU-------------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 85449 0.66 0.873788
Target:  5'- aUGCGGGCcGgcccuggaacUCCUuacGGGCGACGcGCUa -3'
miRNA:   3'- -AUGCCCGuU----------AGGA---CCUGCUGCuCGAg -5'
24348 3' -56.5 NC_005264.1 + 89547 0.66 0.866408
Target:  5'- cGCGGGCAG---UGucCGGCGAGCUUu -3'
miRNA:   3'- aUGCCCGUUaggACcuGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 100201 0.68 0.800326
Target:  5'- cGCGuGCugcgCUUGGACGGCGGGCg- -3'
miRNA:   3'- aUGCcCGuua-GGACCUGCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 100535 0.71 0.633459
Target:  5'- gGCGGGUcuAGUCC-GGACGAC--GCUCg -3'
miRNA:   3'- aUGCCCG--UUAGGaCCUGCUGcuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 108977 0.66 0.901095
Target:  5'- cACGGGguAcgacgcgucucUCCuagccuUGaACGACGAGCUCa -3'
miRNA:   3'- aUGCCCguU-----------AGG------ACcUGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 119117 0.66 0.880951
Target:  5'- gGCGGGCucugCUgggGGAgGGCGAGgaCg -3'
miRNA:   3'- aUGCCCGuua-GGa--CCUgCUGCUCgaG- -5'
24348 3' -56.5 NC_005264.1 + 120642 0.66 0.887893
Target:  5'- aUACGGGacg-CC-GGugGGCGcGGCUCc -3'
miRNA:   3'- -AUGCCCguuaGGaCCugCUGC-UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 122357 0.67 0.851021
Target:  5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3'
miRNA:   3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 123479 0.75 0.405654
Target:  5'- gUACGGGCAugcgguggccgcgcgGUUgCUGGGCGAUGuGCUCg -3'
miRNA:   3'- -AUGCCCGU---------------UAG-GACCUGCUGCuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 124728 0.69 0.753828
Target:  5'- cGCGGGCAAcgCCUGG-CGGCGGa--- -3'
miRNA:   3'- aUGCCCGUUa-GGACCuGCUGCUcgag -5'
24348 3' -56.5 NC_005264.1 + 127809 0.69 0.724568
Target:  5'- gGCGGGCGucggCCaGGACGGCcAGCg- -3'
miRNA:   3'- aUGCCCGUua--GGaCCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 128774 0.73 0.522362
Target:  5'- cUGCGGGCuuccuucuucucGGUUCUGGuuugugGCGACGAGUUCc -3'
miRNA:   3'- -AUGCCCG------------UUAGGACC------UGCUGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.