Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24348 | 3' | -56.5 | NC_005264.1 | + | 128887 | 0.69 | 0.714642 |
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Target: 5'- uUGCGGcaccGCucGUCCUcgacGACGGCGGGCUCa -3' miRNA: 3'- -AUGCC----CGu-UAGGAc---CUGCUGCUCGAG- -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 132270 | 0.67 | 0.850231 |
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Target: 5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3' miRNA: 3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 145662 | 1.07 | 0.003149 |
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Target: 5'- gUACGGGCAAUCCUGGACGACGAGCUCu -3' miRNA: 3'- -AUGCCCGUUAGGACCUGCUGCUCGAG- -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 145936 | 0.66 | 0.901095 |
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Target: 5'- cGCGGGCAugggCCUcaccGACGACG-GCg- -3' miRNA: 3'- aUGCCCGUua--GGAc---CUGCUGCuCGag -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 148674 | 0.68 | 0.782122 |
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Target: 5'- -cCGaGGCGAgaaauagCCUGGuuGGCGAGCUg -3' miRNA: 3'- auGC-CCGUUa------GGACCugCUGCUCGAg -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 151886 | 0.69 | 0.757662 |
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Target: 5'- cGCGGGCAucagCUguauguggcggaggGGACGGCG-GCUCc -3' miRNA: 3'- aUGCCCGUua--GGa-------------CCUGCUGCuCGAG- -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 157361 | 0.7 | 0.664141 |
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Target: 5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3' miRNA: 3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5' |
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| 24348 | 3' | -56.5 | NC_005264.1 | + | 158090 | 0.69 | 0.74417 |
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Target: 5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3' miRNA: 3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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