miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 3' -56.5 NC_005264.1 + 80756 0.66 0.865659
Target:  5'- --gGGGaCAAUCCUcGGCGGCGAagaucuuguccgcGCUCu -3'
miRNA:   3'- augCCC-GUUAGGAcCUGCUGCU-------------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 76345 0.67 0.83484
Target:  5'- cAUGGGCG---CUGGAgGGCGAGCc- -3'
miRNA:   3'- aUGCCCGUuagGACCUgCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 71539 0.67 0.817921
Target:  5'- gUACGGGCAucgcCCUGG-UGACaGAGUUg -3'
miRNA:   3'- -AUGCCCGUua--GGACCuGCUG-CUCGAg -5'
24348 3' -56.5 NC_005264.1 + 66497 0.66 0.880951
Target:  5'- gGCGGGCugcgc-GGcgcgcuCGACGAGCUCg -3'
miRNA:   3'- aUGCCCGuuaggaCCu-----GCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 66201 0.68 0.779343
Target:  5'- gGCGGGCGGUgcgCCUccgcggccagcgaaGGACuuGGCGAGCUg -3'
miRNA:   3'- aUGCCCGUUA---GGA--------------CCUG--CUGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 61824 0.66 0.880951
Target:  5'- -cCGGGCAGUgCCUGGcucgccugcgccGCGuACGGGUUg -3'
miRNA:   3'- auGCCCGUUA-GGACC------------UGC-UGCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 54417 0.67 0.83484
Target:  5'- uUGCGcGGCGcgCCgacuaGGGCGugGGGUUg -3'
miRNA:   3'- -AUGC-CCGUuaGGa----CCUGCugCUCGAg -5'
24348 3' -56.5 NC_005264.1 + 49596 0.67 0.843027
Target:  5'- cGCcGGCGA-CCaGGACGACGGggggcGCUCg -3'
miRNA:   3'- aUGcCCGUUaGGaCCUGCUGCU-----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 47017 0.69 0.724568
Target:  5'- cGCGGuCAGUCCUGG--GGCGAGCg- -3'
miRNA:   3'- aUGCCcGUUAGGACCugCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 45274 0.68 0.782122
Target:  5'- -uCGGGCuGUCCcuugucgaacgUGGACGGCaccuGGCUCa -3'
miRNA:   3'- auGCCCGuUAGG-----------ACCUGCUGc---UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 44992 0.66 0.901095
Target:  5'- --aGGGCGAgCCUGGcgagaacgGCGACGAGa-- -3'
miRNA:   3'- augCCCGUUaGGACC--------UGCUGCUCgag -5'
24348 3' -56.5 NC_005264.1 + 43398 0.68 0.772814
Target:  5'- -gUGGGCGG-CCUGGGCaGCGAGaUCg -3'
miRNA:   3'- auGCCCGUUaGGACCUGcUGCUCgAG- -5'
24348 3' -56.5 NC_005264.1 + 41591 0.67 0.858817
Target:  5'- gACGuGGC-GUCUaaacaUGGGCccgcuGACGAGCUCg -3'
miRNA:   3'- aUGC-CCGuUAGG-----ACCUG-----CUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 39063 0.69 0.74417
Target:  5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3'
miRNA:   3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 38334 0.7 0.664141
Target:  5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3'
miRNA:   3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5'
24348 3' -56.5 NC_005264.1 + 26276 0.7 0.674328
Target:  5'- cGCGGcGCGuUCCUGGAUcGCGAucgGCUCc -3'
miRNA:   3'- aUGCC-CGUuAGGACCUGcUGCU---CGAG- -5'
24348 3' -56.5 NC_005264.1 + 22769 0.68 0.791296
Target:  5'- gGCGGGCAAUgagGGgcGCGGCGAcacuGCUCa -3'
miRNA:   3'- aUGCCCGUUAggaCC--UGCUGCU----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 19025 0.67 0.858817
Target:  5'- aGCGGGCGuga-UGGACGGCaGGCg- -3'
miRNA:   3'- aUGCCCGUuaggACCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 16566 0.66 0.901095
Target:  5'- -gUGGGCGGcgCCgGGGCGGCGGcGCa- -3'
miRNA:   3'- auGCCCGUUa-GGaCCUGCUGCU-CGag -5'
24348 3' -56.5 NC_005264.1 + 15223 0.7 0.674328
Target:  5'- gACGcGGCGAUCCUGcGcucuaaguucaACG-CGGGCUCg -3'
miRNA:   3'- aUGC-CCGUUAGGAC-C-----------UGCuGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.