Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 29460 | 0.66 | 0.527059 |
Target: 5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3' miRNA: 3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 124855 | 0.66 | 0.527059 |
Target: 5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3' miRNA: 3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 104578 | 0.66 | 0.52149 |
Target: 5'- aGCGCCauGCCGCCcacgggaucgggccgAGUgaGCaGCGGAAGg -3' miRNA: 3'- gCGCGG--CGGCGG---------------UCGa-CGgCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 37547 | 0.66 | 0.527059 |
Target: 5'- aGCGUCaGgCGaagcgaCAGCgcgccGCCGCGGAGGg -3' miRNA: 3'- gCGCGG-CgGCg-----GUCGa----CGGCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 138439 | 0.66 | 0.517789 |
Target: 5'- uCGCGCUGCuCGCgAucuaccucGCcGCCGgGGGAGc -3' miRNA: 3'- -GCGCGGCG-GCGgU--------CGaCGGCgCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 125258 | 0.67 | 0.508584 |
Target: 5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3' miRNA: 3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 13889 | 0.67 | 0.481404 |
Target: 5'- aCGCGUCGUCGCCuGCaGgCGaCGGGGc -3' miRNA: 3'- -GCGCGGCGGCGGuCGaCgGC-GCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 129565 | 0.67 | 0.481404 |
Target: 5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3' miRNA: 3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 116419 | 0.67 | 0.463681 |
Target: 5'- cCGCGgCagGUCGCUgggGGCgucugGCCGCGGggGc -3' miRNA: 3'- -GCGCgG--CGGCGG---UCGa----CGGCGCCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 92989 | 0.67 | 0.481404 |
Target: 5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3' miRNA: 3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 124563 | 0.67 | 0.484988 |
Target: 5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3' miRNA: 3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 100584 | 0.67 | 0.508584 |
Target: 5'- aGCGCCGUCGUuguaCAGcCUGUgGCGGc-- -3' miRNA: 3'- gCGCGGCGGCG----GUC-GACGgCGCCuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34169 | 0.67 | 0.508584 |
Target: 5'- cCGCGCCcugcagucacaGCUGCuggaCAGCaGCCGCGGcauGGa -3' miRNA: 3'- -GCGCGG-----------CGGCG----GUCGaCGGCGCCu--UC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 146774 | 0.67 | 0.49945 |
Target: 5'- aGCGCCGCgCGgCGGUucucggUGCgGCGGuguGGa -3' miRNA: 3'- gCGCGGCG-GCgGUCG------ACGgCGCCu--UC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 95368 | 0.67 | 0.49945 |
Target: 5'- gGCGCgUGCCGCCAaaCUGCCaggcGUGGGAc -3' miRNA: 3'- gCGCG-GCGGCGGUc-GACGG----CGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 158858 | 0.67 | 0.476052 |
Target: 5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3' miRNA: 3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 158758 | 0.67 | 0.481404 |
Target: 5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3' miRNA: 3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 126077 | 0.67 | 0.481404 |
Target: 5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3' miRNA: 3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 124463 | 0.67 | 0.490388 |
Target: 5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3' miRNA: 3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 122624 | 0.67 | 0.490388 |
Target: 5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3' miRNA: 3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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