miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 144798 0.67 0.49945
Target:  5'- gGCGCCGCCGCUucGCgucgGCaCGCacuuggugucGGAAa -3'
miRNA:   3'- gCGCGGCGGCGGu-CGa---CG-GCG----------CCUUc -5'
24349 3' -64.4 NC_005264.1 + 126029 0.67 0.508584
Target:  5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3'
miRNA:   3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 154927 0.66 0.545779
Target:  5'- aCGCGCgCGuuGCUAGCcagagCGUGGggGa -3'
miRNA:   3'- -GCGCG-GCggCGGUCGacg--GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 3481 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 21239 0.67 0.481404
Target:  5'- cCGCGuuGaCGaCGGCUcgagugugcgcGCCGCGGAGGu -3'
miRNA:   3'- -GCGCggCgGCgGUCGA-----------CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 3597 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 54920 0.66 0.517789
Target:  5'- uCGCGgCGCUGCUGGCgaacgGCUGCGa--- -3'
miRNA:   3'- -GCGCgGCGGCGGUCGa----CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 5436 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 4727 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 84951 0.67 0.49945
Target:  5'- gGCGCCgggugcucgcuuGCgGCCAgGCUGCUGCGuuAGc -3'
miRNA:   3'- gCGCGG------------CGgCGGU-CGACGGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 5829 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 83390 0.66 0.545779
Target:  5'- aGCuGCCGCuCGUCGucuGCgcGCCGCGGGu- -3'
miRNA:   3'- gCG-CGGCG-GCGGU---CGa-CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 7050 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 160647 0.67 0.484988
Target:  5'- gCGCGCaugGgCGCCGGCaauggaggggcaacGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg--CgGCGGUCGa-------------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 112253 0.67 0.490388
Target:  5'- aGCGCCggGCUGCuCAGC-GCCGCGu--- -3'
miRNA:   3'- gCGCGG--CGGCG-GUCGaCGGCGCcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.