miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 145180 1.15 0.009867
Target:  5'- cCUGAGGCUACGAUAUACAAUUGGCGCg -3'
miRNA:   3'- -GACUCCGAUGCUAUAUGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 121894 0.79 0.787832
Target:  5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3'
miRNA:   3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 2868 0.79 0.787832
Target:  5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3'
miRNA:   3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 36669 0.76 0.897343
Target:  5'- cCUGcGGCUGCGccAUACuc-UGGCGCa -3'
miRNA:   3'- -GACuCCGAUGCuaUAUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 43646 0.74 0.933984
Target:  5'- -cGAGGUcguaGGUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGaug-CUAUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 64261 0.74 0.939151
Target:  5'- aCUGGGGCUGCGGgc-GCcGUUcaucuugcGGCGCa -3'
miRNA:   3'- -GACUCCGAUGCUauaUGuUAA--------CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 56918 0.74 0.953056
Target:  5'- aUGGGGCgGCGuacGUGCG--UGGCGCa -3'
miRNA:   3'- gACUCCGaUGCua-UAUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 54513 0.73 0.964644
Target:  5'- -gGAGGCgGCGGUAcGCuuauucUGGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUAUaUGuua---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 22751 0.73 0.964644
Target:  5'- gCUG-GGCgaaGCGAUAgcggcggGCAAUgaggGGCGCg -3'
miRNA:   3'- -GACuCCGa--UGCUAUa------UGUUAa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137075 0.72 0.974063
Target:  5'- --cAGGCgaaGCGGUGc-CAAUUGGCGCa -3'
miRNA:   3'- gacUCCGa--UGCUAUauGUUAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 56392 0.72 0.974063
Target:  5'- cCUGAGGCgcgACGAUcgcAUAuCGAgcgcGGCGCc -3'
miRNA:   3'- -GACUCCGa--UGCUA---UAU-GUUaa--CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 162652 0.72 0.981291
Target:  5'- -cGAGGCUcggaagcgcgccgGCGGgucguaggUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGA-------------UGCU--------AUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 133281 0.71 0.988792
Target:  5'- -cGGGGCUgGCGAUAaACAAaagGGCGg -3'
miRNA:   3'- gaCUCCGA-UGCUAUaUGUUaa-CCGCg -5'
24350 5' -47.2 NC_005264.1 + 18120 0.71 0.990204
Target:  5'- -aGAGGCUAagaGAcGUGCuugcuGUcUGGCGCg -3'
miRNA:   3'- gaCUCCGAUg--CUaUAUGu----UA-ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 79211 0.7 0.991473
Target:  5'- cCUGGGGCUAgGcugcGUGCAGgcGGCGg -3'
miRNA:   3'- -GACUCCGAUgCua--UAUGUUaaCCGCg -5'
24350 5' -47.2 NC_005264.1 + 140542 0.7 0.992608
Target:  5'- uCUGAGGC-GCGGcUGggaugGCAGaagGGCGCg -3'
miRNA:   3'- -GACUCCGaUGCU-AUa----UGUUaa-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 4473 0.7 0.995309
Target:  5'- -cGAGGCUaaGCGGaaaccguCAAggGGCGCg -3'
miRNA:   3'- gaCUCCGA--UGCUauau---GUUaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 146916 0.69 0.996006
Target:  5'- aCUGgguGGGCUAuCGGg--GCAGUaguucgUGGCGCa -3'
miRNA:   3'- -GAC---UCCGAU-GCUauaUGUUA------ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 137272 0.69 0.996616
Target:  5'- gUGuGGUUGCGAUuccGCGgcGUUGGCGg -3'
miRNA:   3'- gACuCCGAUGCUAua-UGU--UAACCGCg -5'
24350 5' -47.2 NC_005264.1 + 142855 0.69 0.997606
Target:  5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3'
miRNA:   3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.