Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 101856 | 0.67 | 0.999619 |
Target: 5'- -cGAGGCcGCGAUAguc----GGCGCc -3' miRNA: 3'- gaCUCCGaUGCUAUauguuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 82039 | 0.67 | 0.999619 |
Target: 5'- --aGGGuCUACGAUGcGCA---GGCGCg -3' miRNA: 3'- gacUCC-GAUGCUAUaUGUuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 122645 | 0.67 | 0.999402 |
Target: 5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3' miRNA: 3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 95346 | 0.67 | 0.999402 |
Target: 5'- -cGAGGCaAUGGggccgACGGgcGGCGCg -3' miRNA: 3'- gaCUCCGaUGCUaua--UGUUaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 134089 | 0.67 | 0.999402 |
Target: 5'- gCUGucAGGCUGgGAgacGUACAAaguuUUcGGCGCa -3' miRNA: 3'- -GAC--UCCGAUgCUa--UAUGUU----AA-CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 3618 | 0.67 | 0.999402 |
Target: 5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3' miRNA: 3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 16484 | 0.68 | 0.999257 |
Target: 5'- -gGGGGCgACGAgucacAUGCGucAUUcGGCGCg -3' miRNA: 3'- gaCUCCGaUGCUa----UAUGU--UAA-CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 24169 | 0.68 | 0.999084 |
Target: 5'- -cGAGGCUgcuGCGGcc-GCGGUcgguaaagucUGGCGCg -3' miRNA: 3'- gaCUCCGA---UGCUauaUGUUA----------ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 57481 | 0.68 | 0.998877 |
Target: 5'- cCUGGcGGCggcgGCGAagAUGC---UGGCGCg -3' miRNA: 3'- -GACU-CCGa---UGCUa-UAUGuuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 11496 | 0.68 | 0.998877 |
Target: 5'- -cGaAGGCcGCGcggcccuugcccAUGUGCAGUuuuUGGCGCa -3' miRNA: 3'- gaC-UCCGaUGC------------UAUAUGUUA---ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 45466 | 0.68 | 0.998632 |
Target: 5'- --aGGGCcGCGAUGaAC--UUGGCGCa -3' miRNA: 3'- gacUCCGaUGCUAUaUGuuAACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 25192 | 0.68 | 0.998342 |
Target: 5'- uCUGAgGGCcGCG---UACGuGUUGGCGCa -3' miRNA: 3'- -GACU-CCGaUGCuauAUGU-UAACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 43799 | 0.68 | 0.998278 |
Target: 5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3' miRNA: 3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 162825 | 0.68 | 0.998278 |
Target: 5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3' miRNA: 3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 125158 | 0.69 | 0.997851 |
Target: 5'- gUG-GGCUGCGAUGcuuguggGGCGCc -3' miRNA: 3'- gACuCCGAUGCUAUauguuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 142855 | 0.69 | 0.997606 |
Target: 5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3' miRNA: 3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 137272 | 0.69 | 0.996616 |
Target: 5'- gUGuGGUUGCGAUuccGCGgcGUUGGCGg -3' miRNA: 3'- gACuCCGAUGCUAua-UGU--UAACCGCg -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 146916 | 0.69 | 0.996006 |
Target: 5'- aCUGgguGGGCUAuCGGg--GCAGUaguucgUGGCGCa -3' miRNA: 3'- -GAC---UCCGAU-GCUauaUGUUA------ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 4473 | 0.7 | 0.995309 |
Target: 5'- -cGAGGCUaaGCGGaaaccguCAAggGGCGCg -3' miRNA: 3'- gaCUCCGA--UGCUauau---GUUaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 140542 | 0.7 | 0.992608 |
Target: 5'- uCUGAGGC-GCGGcUGggaugGCAGaagGGCGCg -3' miRNA: 3'- -GACUCCGaUGCU-AUa----UGUUaa-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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