Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24351 | 5' | -58.9 | NC_005264.1 | + | 143947 | 0.97 | 0.010594 |
Target: 5'- uACCAGCCCAAGCCGGaGAGACCCAUGa -3' miRNA: 3'- -UGGUCGGGUUCGGCCcUUCUGGGUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 150546 | 0.74 | 0.365655 |
Target: 5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3' miRNA: 3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 31519 | 0.74 | 0.365655 |
Target: 5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3' miRNA: 3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 137727 | 0.72 | 0.423875 |
Target: 5'- gGCgAGCCCGcaAGCCuaccaGGGAAGACCUGUu -3' miRNA: 3'- -UGgUCGGGU--UCGG-----CCCUUCUGGGUAc -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 154354 | 0.72 | 0.459536 |
Target: 5'- cGCCGGCCCAcucuGCUGcuuGggGACCCAg- -3' miRNA: 3'- -UGGUCGGGUu---CGGCc--CuuCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 158985 | 0.71 | 0.468699 |
Target: 5'- -gCAGCCCAAuccCCGGcGcAGGACCCAUGc -3' miRNA: 3'- ugGUCGGGUUc--GGCC-C-UUCUGGGUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 127697 | 0.71 | 0.50624 |
Target: 5'- cACCGcGgCCAGGCCgGGGAAGAauCCCGUc -3' miRNA: 3'- -UGGU-CgGGUUCGG-CCCUUCU--GGGUAc -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 8258 | 0.71 | 0.514866 |
Target: 5'- gGCCAGCggcgcccugguguCCGccucguugcaGGCCGGGGAGAUCCGc- -3' miRNA: 3'- -UGGUCG-------------GGU----------UCGGCCCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 5056 | 0.71 | 0.515829 |
Target: 5'- cGCC-GCCU-AGCUGGGAAGACgCCgAUGg -3' miRNA: 3'- -UGGuCGGGuUCGGCCCUUCUG-GG-UAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 148343 | 0.71 | 0.515829 |
Target: 5'- gACCGuGcCCCGGGCCGGGGAG-CUCuUGg -3' miRNA: 3'- -UGGU-C-GGGUUCGGCCCUUCuGGGuAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 63292 | 0.71 | 0.515829 |
Target: 5'- aACCGGCCCcAGUCGGGGgaugcGGACUCc-- -3' miRNA: 3'- -UGGUCGGGuUCGGCCCU-----UCUGGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 33916 | 0.7 | 0.545009 |
Target: 5'- cGCCuuucuGCcgCCAGGCUGGGAAGGCC-GUGg -3' miRNA: 3'- -UGGu----CG--GGUUCGGCCCUUCUGGgUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 73468 | 0.7 | 0.554857 |
Target: 5'- aGCCGGCgCuuGCCGucaGGAAGGCCCGg- -3' miRNA: 3'- -UGGUCGgGuuCGGC---CCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 152950 | 0.7 | 0.564757 |
Target: 5'- uGCC-GCCaGGGCUGGGAAGGCC-GUGg -3' miRNA: 3'- -UGGuCGGgUUCGGCCCUUCUGGgUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 42821 | 0.69 | 0.584688 |
Target: 5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3' miRNA: 3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 161847 | 0.69 | 0.584688 |
Target: 5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3' miRNA: 3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 5079 | 0.69 | 0.584688 |
Target: 5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3' miRNA: 3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 124106 | 0.69 | 0.584688 |
Target: 5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3' miRNA: 3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 6005 | 0.69 | 0.614816 |
Target: 5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3' miRNA: 3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 125032 | 0.69 | 0.614816 |
Target: 5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3' miRNA: 3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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