miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24351 5' -58.9 NC_005264.1 + 518 0.67 0.705049
Target:  5'- uCCguGGCCCAGGCCGaccGAucAGACCCGc- -3'
miRNA:   3'- uGG--UCGGGUUCGGCc--CU--UCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 4556 0.68 0.682206
Target:  5'- cGCCaAGUcucgggaucacaagCCGAGCCGGGAacgcAGGCCCu-- -3'
miRNA:   3'- -UGG-UCG--------------GGUUCGGCCCU----UCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 5056 0.71 0.515829
Target:  5'- cGCC-GCCU-AGCUGGGAAGACgCCgAUGg -3'
miRNA:   3'- -UGGuCGGGuUCGGCCCUUCUG-GG-UAC- -5'
24351 5' -58.9 NC_005264.1 + 5079 0.69 0.584688
Target:  5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3'
miRNA:   3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5'
24351 5' -58.9 NC_005264.1 + 6005 0.69 0.614816
Target:  5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3'
miRNA:   3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5'
24351 5' -58.9 NC_005264.1 + 8258 0.71 0.514866
Target:  5'- gGCCAGCggcgcccugguguCCGccucguugcaGGCCGGGGAGAUCCGc- -3'
miRNA:   3'- -UGGUCG-------------GGU----------UCGGCCCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 17683 0.68 0.675207
Target:  5'- gGCgCAGCCgAGGCCGcGgcGGCUCGUGu -3'
miRNA:   3'- -UG-GUCGGgUUCGGCcCuuCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 26953 0.68 0.645057
Target:  5'- uACUcgaAGUCC--GCCGGG-AGGCCCAUGc -3'
miRNA:   3'- -UGG---UCGGGuuCGGCCCuUCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 31519 0.74 0.365655
Target:  5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3'
miRNA:   3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5'
24351 5' -58.9 NC_005264.1 + 33916 0.7 0.545009
Target:  5'- cGCCuuucuGCcgCCAGGCUGGGAAGGCC-GUGg -3'
miRNA:   3'- -UGGu----CG--GGUUCGGCCCUUCUGGgUAC- -5'
24351 5' -58.9 NC_005264.1 + 34399 0.68 0.685199
Target:  5'- gGCgCGGCUCGAGCUcaGGGAaugagccgAGACCCGc- -3'
miRNA:   3'- -UG-GUCGGGUUCGG--CCCU--------UCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 41093 0.69 0.634976
Target:  5'- gACgGGCCC-GGCCGcGGgcGGCCUAUc -3'
miRNA:   3'- -UGgUCGGGuUCGGC-CCuuCUGGGUAc -5'
24351 5' -58.9 NC_005264.1 + 42821 0.69 0.584688
Target:  5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3'
miRNA:   3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 54174 0.67 0.743959
Target:  5'- aACCGcGCCCuGGCCGGG-AGACgaCAc- -3'
miRNA:   3'- -UGGU-CGGGuUCGGCCCuUCUGg-GUac -5'
24351 5' -58.9 NC_005264.1 + 63292 0.71 0.515829
Target:  5'- aACCGGCCCcAGUCGGGGgaugcGGACUCc-- -3'
miRNA:   3'- -UGGUCGGGuUCGGCCCU-----UCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 68247 0.68 0.655127
Target:  5'- aGCCAuGCCCGcGCCGcGGgcGGCCUg-- -3'
miRNA:   3'- -UGGU-CGGGUuCGGC-CCuuCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 73468 0.7 0.554857
Target:  5'- aGCCGGCgCuuGCCGucaGGAAGGCCCGg- -3'
miRNA:   3'- -UGGUCGgGuuCGGC---CCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 73659 0.66 0.799302
Target:  5'- cACCuGCC---GCCGGGAcGACCCu-- -3'
miRNA:   3'- -UGGuCGGguuCGGCCCUuCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 75107 0.67 0.753471
Target:  5'- cGCCGGCgCCGAGCUGGGGcgcAGuCaaAUGg -3'
miRNA:   3'- -UGGUCG-GGUUCGGCCCU---UCuGggUAC- -5'
24351 5' -58.9 NC_005264.1 + 80028 0.68 0.655127
Target:  5'- uCCGGUUgGAGCgGGGGAGACCa--- -3'
miRNA:   3'- uGGUCGGgUUCGgCCCUUCUGGguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.