Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24351 | 5' | -58.9 | NC_005264.1 | + | 150546 | 0.74 | 0.365655 |
Target: 5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3' miRNA: 3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 73659 | 0.66 | 0.799302 |
Target: 5'- cACCuGCC---GCCGGGAcGACCCu-- -3' miRNA: 3'- -UGGuCGGguuCGGCCCUuCUGGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 75107 | 0.67 | 0.753471 |
Target: 5'- cGCCGGCgCCGAGCUGGGGcgcAGuCaaAUGg -3' miRNA: 3'- -UGGUCG-GGUUCGGCCCU---UCuGggUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 119545 | 0.67 | 0.705049 |
Target: 5'- uCCguGGCCCAGGCCGaccGAucAGACCCGc- -3' miRNA: 3'- uGG--UCGGGUUCGGCc--CU--UCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 34399 | 0.68 | 0.685199 |
Target: 5'- gGCgCGGCUCGAGCUcaGGGAaugagccgAGACCCGc- -3' miRNA: 3'- -UG-GUCGGGUUCGG--CCCU--------UCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 123583 | 0.68 | 0.682206 |
Target: 5'- cGCCaAGUcucgggaucacaagCCGAGCCGGGAacgcAGGCCCu-- -3' miRNA: 3'- -UGG-UCG--------------GGUUCGGCCCU----UCUGGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 17683 | 0.68 | 0.675207 |
Target: 5'- gGCgCAGCCgAGGCCGcGgcGGCUCGUGu -3' miRNA: 3'- -UG-GUCGGgUUCGGCcCuuCUGGGUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 68247 | 0.68 | 0.655127 |
Target: 5'- aGCCAuGCCCGcGCCGcGGgcGGCCUg-- -3' miRNA: 3'- -UGGU-CGGGUuCGGC-CCuuCUGGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 115794 | 0.69 | 0.634976 |
Target: 5'- cCCAGCCCAuagacacgugGGaCCGcGGGAGGCCgCGUu -3' miRNA: 3'- uGGUCGGGU----------UC-GGC-CCUUCUGG-GUAc -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 160120 | 0.69 | 0.634976 |
Target: 5'- gACgGGCCC-GGCCGcGGgcGGCCUAUc -3' miRNA: 3'- -UGgUCGGGuUCGGC-CCuuCUGGGUAc -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 125032 | 0.69 | 0.614816 |
Target: 5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3' miRNA: 3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 137727 | 0.72 | 0.423875 |
Target: 5'- gGCgAGCCCGcaAGCCuaccaGGGAAGACCUGUu -3' miRNA: 3'- -UGgUCGGGU--UCGG-----CCCUUCUGGGUAc -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 8258 | 0.71 | 0.514866 |
Target: 5'- gGCCAGCggcgcccugguguCCGccucguugcaGGCCGGGGAGAUCCGc- -3' miRNA: 3'- -UGGUCG-------------GGU----------UCGGCCCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 5056 | 0.71 | 0.515829 |
Target: 5'- cGCC-GCCU-AGCUGGGAAGACgCCgAUGg -3' miRNA: 3'- -UGGuCGGGuUCGGCCCUUCUG-GG-UAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 63292 | 0.71 | 0.515829 |
Target: 5'- aACCGGCCCcAGUCGGGGgaugcGGACUCc-- -3' miRNA: 3'- -UGGUCGGGuUCGGCCCU-----UCUGGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 152950 | 0.7 | 0.564757 |
Target: 5'- uGCC-GCCaGGGCUGGGAAGGCC-GUGg -3' miRNA: 3'- -UGGuCGGgUUCGGCCCUUCUGGgUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 124106 | 0.69 | 0.584688 |
Target: 5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3' miRNA: 3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 161847 | 0.69 | 0.584688 |
Target: 5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3' miRNA: 3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 143947 | 0.97 | 0.010594 |
Target: 5'- uACCAGCCCAAGCCGGaGAGACCCAUGa -3' miRNA: 3'- -UGGUCGGGUUCGGCCcUUCUGGGUAC- -5' |
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24351 | 5' | -58.9 | NC_005264.1 | + | 159848 | 0.66 | 0.78135 |
Target: 5'- cGCCGGCCC-AGUCGGcGcucgcauGGAUUCGUGg -3' miRNA: 3'- -UGGUCGGGuUCGGCC-Cu------UCUGGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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