miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24352 3' -59.1 NC_005264.1 + 143615 1.1 0.001173
Target:  5'- cACGUAGCAACUGCCGGCCCUGCUCCCu -3'
miRNA:   3'- -UGCAUCGUUGACGGCCGGGACGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 122250 0.76 0.269945
Target:  5'- uGCGUaguuccaacAGCAGCUGCCGGUUCaGCUCUUg -3'
miRNA:   3'- -UGCA---------UCGUUGACGGCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 3223 0.76 0.269945
Target:  5'- uGCGUaguuccaacAGCAGCUGCCGGUUCaGCUCUUg -3'
miRNA:   3'- -UGCA---------UCGUUGACGGCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 50220 0.75 0.316702
Target:  5'- uGCGUugcGUGACcgGCgGGCCCcGCUCCCa -3'
miRNA:   3'- -UGCAu--CGUUGa-CGgCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 154830 0.74 0.331136
Target:  5'- uCGUGGCGGgcgccuCUGCCGGCCCcgcaaugGCggCCCg -3'
miRNA:   3'- uGCAUCGUU------GACGGCCGGGa------CGa-GGG- -5'
24352 3' -59.1 NC_005264.1 + 35804 0.74 0.331136
Target:  5'- uCGUGGCGGgcgccuCUGCCGGCCCcgcaaugGCggCCCg -3'
miRNA:   3'- uGCAUCGUU------GACGGCCGGGa------CGa-GGG- -5'
24352 3' -59.1 NC_005264.1 + 125442 0.72 0.416359
Target:  5'- gACG-AGCGAuuguugcggucccuCUGCCGcGCCCUGCUCg- -3'
miRNA:   3'- -UGCaUCGUU--------------GACGGC-CGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 40383 0.71 0.509893
Target:  5'- uGCG-AGCAGCgcggGCgCGGCCCUacguccCUCCCc -3'
miRNA:   3'- -UGCaUCGUUGa---CG-GCCGGGAc-----GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 159410 0.71 0.509893
Target:  5'- uGCG-AGCAGCgcggGCgCGGCCCUacguccCUCCCc -3'
miRNA:   3'- -UGCaUCGUUGa---CG-GCCGGGAc-----GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 42364 0.71 0.519462
Target:  5'- ---cGGCGAUgGCCGGUgCUgGCUCCCg -3'
miRNA:   3'- ugcaUCGUUGaCGGCCGgGA-CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 161391 0.71 0.519462
Target:  5'- ---cGGCGAUgGCCGGUgCUgGCUCCCg -3'
miRNA:   3'- ugcaUCGUUGaCGGCCGgGA-CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 142798 0.7 0.529102
Target:  5'- cGCGUGGCGACaUGCCaGGCCaugguagGaCUCCa -3'
miRNA:   3'- -UGCAUCGUUG-ACGG-CCGGga-----C-GAGGg -5'
24352 3' -59.1 NC_005264.1 + 128984 0.7 0.53686
Target:  5'- gGCG-AGgGACUGCCGGaCCCgUGCggcgaugccgagCCCa -3'
miRNA:   3'- -UGCaUCgUUGACGGCC-GGG-ACGa-----------GGG- -5'
24352 3' -59.1 NC_005264.1 + 52723 0.7 0.538806
Target:  5'- aGCGcGGCGGCUcUCGGCCCcugucguucUGCUCCg -3'
miRNA:   3'- -UGCaUCGUUGAcGGCCGGG---------ACGAGGg -5'
24352 3' -59.1 NC_005264.1 + 9958 0.7 0.538806
Target:  5'- gGCG-AGgGACUGCCGGaCCCguggGCgaugccgagCCCa -3'
miRNA:   3'- -UGCaUCgUUGACGGCC-GGGa---CGa--------GGG- -5'
24352 3' -59.1 NC_005264.1 + 17761 0.7 0.548571
Target:  5'- uCGcGGCAaggagaGCUGcCCGGCCCgGCUUCUa -3'
miRNA:   3'- uGCaUCGU------UGAC-GGCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 39820 0.7 0.568258
Target:  5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3'
miRNA:   3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 158846 0.7 0.568258
Target:  5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3'
miRNA:   3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 158559 0.69 0.628152
Target:  5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3'
miRNA:   3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 39532 0.69 0.628152
Target:  5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3'
miRNA:   3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.