Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24352 | 3' | -59.1 | NC_005264.1 | + | 3223 | 0.76 | 0.269945 |
Target: 5'- uGCGUaguuccaacAGCAGCUGCCGGUUCaGCUCUUg -3' miRNA: 3'- -UGCA---------UCGUUGACGGCCGGGaCGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 9749 | 0.68 | 0.678196 |
Target: 5'- gGCGgcaGGCAA--GCC-GCCgUGCUCCCa -3' miRNA: 3'- -UGCa--UCGUUgaCGGcCGGgACGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 9958 | 0.7 | 0.538806 |
Target: 5'- gGCG-AGgGACUGCCGGaCCCguggGCgaugccgagCCCa -3' miRNA: 3'- -UGCaUCgUUGACGGCC-GGGa---CGa--------GGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 12131 | 0.67 | 0.746485 |
Target: 5'- gGCG-GGCAGCcccGCCGagaGCCCUGC-CUCg -3' miRNA: 3'- -UGCaUCGUUGa--CGGC---CGGGACGaGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 13357 | 0.67 | 0.70785 |
Target: 5'- aACGUcGgGGCcgaGCCggGGCCCgcgGCUCCCc -3' miRNA: 3'- -UGCAuCgUUGa--CGG--CCGGGa--CGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 17761 | 0.7 | 0.548571 |
Target: 5'- uCGcGGCAaggagaGCUGcCCGGCCCgGCUUCUa -3' miRNA: 3'- uGCaUCGU------UGAC-GGCCGGGaCGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 19777 | 0.67 | 0.755925 |
Target: 5'- -aGUAGCucuaUGCCGGUgCcGCUgCCCg -3' miRNA: 3'- ugCAUCGuug-ACGGCCGgGaCGA-GGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 24147 | 0.68 | 0.668228 |
Target: 5'- -aGUGGCAACcGUCGGCCUgguaGCUgugaagcggcaCCCa -3' miRNA: 3'- ugCAUCGUUGaCGGCCGGGa---CGA-----------GGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 30346 | 0.68 | 0.668228 |
Target: 5'- -aGUcAGCAGCUGCCcugcGGCCaCgugGCUgCCg -3' miRNA: 3'- ugCA-UCGUUGACGG----CCGG-Ga--CGAgGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 35804 | 0.74 | 0.331136 |
Target: 5'- uCGUGGCGGgcgccuCUGCCGGCCCcgcaaugGCggCCCg -3' miRNA: 3'- uGCAUCGUU------GACGGCCGGGa------CGa-GGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 37645 | 0.66 | 0.804866 |
Target: 5'- gACGUGGCGGagaugaaggcuucggUUGCCGGCaUCgGCgCCCc -3' miRNA: 3'- -UGCAUCGUU---------------GACGGCCG-GGaCGaGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 37667 | 0.67 | 0.727325 |
Target: 5'- cGCGaUGcGCGACgggcGCgCGGCCCUcGCccUCCCg -3' miRNA: 3'- -UGC-AU-CGUUGa---CG-GCCGGGA-CG--AGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 38384 | 0.67 | 0.753103 |
Target: 5'- gGCGagAGCGGCgacgccgagacagaUGCCGcguacGCCCUGCUggCCCc -3' miRNA: 3'- -UGCa-UCGUUG--------------ACGGC-----CGGGACGA--GGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 38471 | 0.66 | 0.77448 |
Target: 5'- -gGUAGCAuGCUGCCGcGCUUUcuCUCCUa -3' miRNA: 3'- ugCAUCGU-UGACGGC-CGGGAc-GAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 39532 | 0.69 | 0.628152 |
Target: 5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3' miRNA: 3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 39820 | 0.7 | 0.568258 |
Target: 5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3' miRNA: 3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 40383 | 0.71 | 0.509893 |
Target: 5'- uGCG-AGCAGCgcggGCgCGGCCCUacguccCUCCCc -3' miRNA: 3'- -UGCaUCGUUGa---CG-GCCGGGAc-----GAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 41342 | 0.68 | 0.668228 |
Target: 5'- uCGUcgaAGCAGCcGCgaaGGCCCaGCUCCg -3' miRNA: 3'- uGCA---UCGUUGaCGg--CCGGGaCGAGGg -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 42364 | 0.71 | 0.519462 |
Target: 5'- ---cGGCGAUgGCCGGUgCUgGCUCCCg -3' miRNA: 3'- ugcaUCGUUGaCGGCCGgGA-CGAGGG- -5' |
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24352 | 3' | -59.1 | NC_005264.1 | + | 50220 | 0.75 | 0.316702 |
Target: 5'- uGCGUugcGUGACcgGCgGGCCCcGCUCCCa -3' miRNA: 3'- -UGCAu--CGUUGa-CGgCCGGGaCGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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