miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24352 3' -59.1 NC_005264.1 + 66994 0.66 0.764331
Target:  5'- gGCG-AGCAacggcgaguGCUGCCuggacggagcggcGGCCUUGCgcaggCCCc -3'
miRNA:   3'- -UGCaUCGU---------UGACGG-------------CCGGGACGa----GGG- -5'
24352 3' -59.1 NC_005264.1 + 9749 0.68 0.678196
Target:  5'- gGCGgcaGGCAA--GCC-GCCgUGCUCCCa -3'
miRNA:   3'- -UGCa--UCGUUgaCGGcCGGgACGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 156685 0.68 0.698016
Target:  5'- cACGUGcacgcgaugcGCGACgggcGCgCGGCCCUcGCccUCCCg -3'
miRNA:   3'- -UGCAU----------CGUUGa---CG-GCCGGGA-CG--AGGG- -5'
24352 3' -59.1 NC_005264.1 + 132384 0.67 0.70785
Target:  5'- aACGUcGgGGCcgaGCCggGGCCCgcgGCUCCCc -3'
miRNA:   3'- -UGCAuCgUUGa--CGG--CCGGGa--CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 68628 0.67 0.717623
Target:  5'- uCGUAGCAACgcgugguagGCgacgaGGCUCUGCaguuUCCCc -3'
miRNA:   3'- uGCAUCGUUGa--------CGg----CCGGGACG----AGGG- -5'
24352 3' -59.1 NC_005264.1 + 55835 0.67 0.727325
Target:  5'- gGCGgcGCGGCUGaCUGGgCCUcaggGCUUCUg -3'
miRNA:   3'- -UGCauCGUUGAC-GGCCgGGA----CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 85431 0.67 0.746485
Target:  5'- cACGUcGUcGCUauccauaugcggGCCGGCCCUGgaaCUCCUu -3'
miRNA:   3'- -UGCAuCGuUGA------------CGGCCGGGAC---GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 131158 0.67 0.746485
Target:  5'- gGCG-GGCAGCcccGCCGagaGCCCUGC-CUCg -3'
miRNA:   3'- -UGCaUCGUUGa--CGGC---CGGGACGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 157411 0.67 0.753103
Target:  5'- gGCGagAGCGGCgacgccgagacagaUGCCGcguacGCCCUGCUggCCCc -3'
miRNA:   3'- -UGCa-UCGUUG--------------ACGGC-----CGGGACGA--GGG- -5'
24352 3' -59.1 NC_005264.1 + 160369 0.68 0.668228
Target:  5'- uCGUcgaAGCAGCcGCgaaGGCCCaGCUCCg -3'
miRNA:   3'- uGCA---UCGUUGaCGg--CCGGGaCGAGGg -5'
24352 3' -59.1 NC_005264.1 + 30346 0.68 0.668228
Target:  5'- -aGUcAGCAGCUGCCcugcGGCCaCgugGCUgCCg -3'
miRNA:   3'- ugCA-UCGUUGACGG----CCGG-Ga--CGAgGG- -5'
24352 3' -59.1 NC_005264.1 + 75205 0.68 0.648214
Target:  5'- cGCGccccacGCGGCUGCauCGGCCCUGCgcggcggCCg -3'
miRNA:   3'- -UGCau----CGUUGACG--GCCGGGACGa------GGg -5'
24352 3' -59.1 NC_005264.1 + 154830 0.74 0.331136
Target:  5'- uCGUGGCGGgcgccuCUGCCGGCCCcgcaaugGCggCCCg -3'
miRNA:   3'- uGCAUCGUU------GACGGCCGGGa------CGa-GGG- -5'
24352 3' -59.1 NC_005264.1 + 159410 0.71 0.509893
Target:  5'- uGCG-AGCAGCgcggGCgCGGCCCUacguccCUCCCc -3'
miRNA:   3'- -UGCaUCGUUGa---CG-GCCGGGAc-----GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 161391 0.71 0.519462
Target:  5'- ---cGGCGAUgGCCGGUgCUgGCUCCCg -3'
miRNA:   3'- ugcaUCGUUGaCGGCCGgGA-CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 128984 0.7 0.53686
Target:  5'- gGCG-AGgGACUGCCGGaCCCgUGCggcgaugccgagCCCa -3'
miRNA:   3'- -UGCaUCgUUGACGGCC-GGG-ACGa-----------GGG- -5'
24352 3' -59.1 NC_005264.1 + 52723 0.7 0.538806
Target:  5'- aGCGcGGCGGCUcUCGGCCCcugucguucUGCUCCg -3'
miRNA:   3'- -UGCaUCGUUGAcGGCCGGG---------ACGAGGg -5'
24352 3' -59.1 NC_005264.1 + 17761 0.7 0.548571
Target:  5'- uCGcGGCAaggagaGCUGcCCGGCCCgGCUUCUa -3'
miRNA:   3'- uGCaUCGU------UGAC-GGCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 158846 0.7 0.568258
Target:  5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3'
miRNA:   3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 158559 0.69 0.628152
Target:  5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3'
miRNA:   3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.