miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 120199 0.68 0.981636
Target:  5'- uGCCGGCGCGcgauggGGGUAcgcagCGGACCGg- -3'
miRNA:   3'- cCGGUCGUGCa-----UCCAUa----GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 117042 0.69 0.961879
Target:  5'- -aUCAGCGCGgcGGcc-CAGACCGCAa -3'
miRNA:   3'- ccGGUCGUGCauCCauaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 111726 0.71 0.93075
Target:  5'- cGCCAGCGuCG-AGGcgcgagCAGACCGCAg -3'
miRNA:   3'- cCGGUCGU-GCaUCCaua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 108437 0.66 0.996423
Target:  5'- --gUAGCGCGUGGGgagAUUAGcggaguuGCCGCAu -3'
miRNA:   3'- ccgGUCGUGCAUCCa--UAGUU-------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 107704 0.72 0.871017
Target:  5'- cGCCAGCACagcgcacggcgGGGUGUCGAACCc-- -3'
miRNA:   3'- cCGGUCGUGca---------UCCAUAGUUUGGugu -5'
24354 5' -50.6 NC_005264.1 + 102756 0.66 0.993488
Target:  5'- cGCCGGCA-GUAGGcUAggggCGGGCCAg- -3'
miRNA:   3'- cCGGUCGUgCAUCC-AUa---GUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 102317 0.71 0.924732
Target:  5'- cGGCCGGCauGCGUAGGUuacUCAcguuguacgaagcGGCCAa- -3'
miRNA:   3'- -CCGGUCG--UGCAUCCAu--AGU-------------UUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 98476 0.7 0.95003
Target:  5'- cGGCCGGCACGcgcgAGGgcaucuccUCAGcGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCa---UCCau------AGUU-UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97745 0.66 0.99517
Target:  5'- aGGCCGGCACGacccGGUGUUcguguuuGACCcucACGg -3'
miRNA:   3'- -CCGGUCGUGCau--CCAUAGu------UUGG---UGU- -5'
24354 5' -50.6 NC_005264.1 + 97213 0.66 0.99648
Target:  5'- cGGUgcGCGCGcGGGUAcccaCGAGCCGCGa -3'
miRNA:   3'- -CCGguCGUGCaUCCAUa---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97111 0.66 0.995867
Target:  5'- cGGCCAGCGCGaguuGGccucugagcUCAAggGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCau--CCau-------AGUU--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 94520 0.66 0.995867
Target:  5'- cGUCGGcCACGUGGGagggCAGcggcGCCGCAc -3'
miRNA:   3'- cCGGUC-GUGCAUCCaua-GUU----UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 93502 0.73 0.864852
Target:  5'- cGGCCGGCGCGUc-GUucccuUCGGACCugAa -3'
miRNA:   3'- -CCGGUCGUGCAucCAu----AGUUUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 88692 0.66 0.99438
Target:  5'- aGGCCgaAGCagcuGCGUGGcGUG-CAuGCCGCAu -3'
miRNA:   3'- -CCGG--UCG----UGCAUC-CAUaGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 86158 0.74 0.814281
Target:  5'- cGCCaAGCugGgcagAGGUAUCuucuGCCGCAc -3'
miRNA:   3'- cCGG-UCGugCa---UCCAUAGuu--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 84179 0.66 0.99517
Target:  5'- cGCCGGCACauaGUGGGa--CGAGgCACAg -3'
miRNA:   3'- cCGGUCGUG---CAUCCauaGUUUgGUGU- -5'
24354 5' -50.6 NC_005264.1 + 83224 0.78 0.622266
Target:  5'- gGGCCGuuGCGCGUGGGcGUCuAGGCCGCc -3'
miRNA:   3'- -CCGGU--CGUGCAUCCaUAG-UUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 77263 0.67 0.987202
Target:  5'- -cCCAGCACGU-GGUG-CAcgguGCCGCGc -3'
miRNA:   3'- ccGGUCGUGCAuCCAUaGUu---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 76008 0.71 0.919577
Target:  5'- cGGCgugAGCACGUuccAGGUAUCc-ACCGCGa -3'
miRNA:   3'- -CCGg--UCGUGCA---UCCAUAGuuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 75107 0.66 0.995867
Target:  5'- cGCCGGCGCcgagcUGGGgcgcaGUCAAaugGCCGCGc -3'
miRNA:   3'- cCGGUCGUGc----AUCCa----UAGUU---UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.