miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 77263 0.67 0.987202
Target:  5'- -cCCAGCACGU-GGUG-CAcgguGCCGCGc -3'
miRNA:   3'- ccGGUCGUGCAuCCAUaGUu---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97745 0.66 0.99517
Target:  5'- aGGCCGGCACGacccGGUGUUcguguuuGACCcucACGg -3'
miRNA:   3'- -CCGGUCGUGCau--CCAUAGu------UUGG---UGU- -5'
24354 5' -50.6 NC_005264.1 + 83224 0.78 0.622266
Target:  5'- gGGCCGuuGCGCGUGGGcGUCuAGGCCGCc -3'
miRNA:   3'- -CCGGU--CGUGCAUCCaUAG-UUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 102317 0.71 0.924732
Target:  5'- cGGCCGGCauGCGUAGGUuacUCAcguuguacgaagcGGCCAa- -3'
miRNA:   3'- -CCGGUCG--UGCAUCCAu--AGU-------------UUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 139464 0.69 0.97162
Target:  5'- cGGCCAG-GCGUGucuGG-AUCGGACCAUc -3'
miRNA:   3'- -CCGGUCgUGCAU---CCaUAGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 123612 0.66 0.99517
Target:  5'- cGGCCGGUAUu--GGUGuUCAAguauccggcaGCCGCAg -3'
miRNA:   3'- -CCGGUCGUGcauCCAU-AGUU----------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 137541 0.71 0.925292
Target:  5'- cGGCCucGGCgACGUGGuagGUCAcACCACAc -3'
miRNA:   3'- -CCGG--UCG-UGCAUCca-UAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 84179 0.66 0.99517
Target:  5'- cGCCGGCACauaGUGGGa--CGAGgCACAg -3'
miRNA:   3'- cCGGUCGUG---CAUCCauaGUUUgGUGU- -5'
24354 5' -50.6 NC_005264.1 + 154738 0.66 0.99517
Target:  5'- cGGCCGGUACcUGuGUAUCGcgUCGCGa -3'
miRNA:   3'- -CCGGUCGUGcAUcCAUAGUuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 15926 0.69 0.971327
Target:  5'- aGGUguGCGCGUGaguuucgagcgucGGUuugcgCGAGCCACGa -3'
miRNA:   3'- -CCGguCGUGCAU-------------CCAua---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 20575 0.73 0.864852
Target:  5'- uGCCAGCGCGcGGGUGUU---CCAUAg -3'
miRNA:   3'- cCGGUCGUGCaUCCAUAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 132403 0.66 0.993488
Target:  5'- uGGCCgcaGGCACG-AGcUA-CAAGCCGCGg -3'
miRNA:   3'- -CCGG---UCGUGCaUCcAUaGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 152147 0.66 0.99517
Target:  5'- aGGCCAGCACGga-GUA-CAucGACUugAa -3'
miRNA:   3'- -CCGGUCGUGCaucCAUaGU--UUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 157255 0.7 0.94559
Target:  5'- cGGCCcucGGCGCGUuggAGGUgGUCu--CCGCAa -3'
miRNA:   3'- -CCGG---UCGUGCA---UCCA-UAGuuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 6607 0.72 0.900241
Target:  5'- cGGCgAGCGCGUGGGaaAUUAugcccacGGCCACGc -3'
miRNA:   3'- -CCGgUCGUGCAUCCa-UAGU-------UUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 141663 1.12 0.006625
Target:  5'- cGGCCAGCACGUAGGUAUCAAACCACAc -3'
miRNA:   3'- -CCGGUCGUGCAUCCAUAGUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153802 0.69 0.95817
Target:  5'- cGCUAgGCuCGUGGGUgaGUCuAGACCGCAu -3'
miRNA:   3'- cCGGU-CGuGCAUCCA--UAG-UUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21196 0.66 0.99546
Target:  5'- uGGCCGGCcguaguagacucaauACGgcGGUGccCcGACCGCGa -3'
miRNA:   3'- -CCGGUCG---------------UGCauCCAUa-GuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 128856 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 162667 0.66 0.99517
Target:  5'- cGCCGGCGgguCGUAGGUguacgGUCGGcgcGCUGCGc -3'
miRNA:   3'- cCGGUCGU---GCAUCCA-----UAGUU---UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.