miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 85474 0.66 0.996806
Target:  5'- -aCGGGcGAcGCGCUAgacgGGACGGagaUCGCCa -3'
miRNA:   3'- gaGCCU-CU-UGUGGUa---UUUGCC---AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 125480 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 150557 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 97422 0.66 0.996806
Target:  5'- uUCGGcaguGAGCGCU----GCGGgCGCCg -3'
miRNA:   3'- gAGCCu---CUUGUGGuauuUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 156272 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46377 0.66 0.997719
Target:  5'- -gCGcAGGACACCgAUAcGCGgGUCGUCa -3'
miRNA:   3'- gaGCcUCUUGUGG-UAUuUGC-CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 70938 0.66 0.997719
Target:  5'- aCUCGGucucaaguacguGGAGCugCcUGGGCuGUCGCUc -3'
miRNA:   3'- -GAGCC------------UCUUGugGuAUUUGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 102510 0.66 0.998086
Target:  5'- gCUCGGGGAAgAC----AACGG-CGCUa -3'
miRNA:   3'- -GAGCCUCUUgUGguauUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 85852 0.66 0.998086
Target:  5'- -cCGGAGGgagGC-CCAUAGAUGG-CGUg -3'
miRNA:   3'- gaGCCUCU---UGuGGUAUUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 148297 0.66 0.997981
Target:  5'- -cUGGAGAccgcgcgcgugcGCGCCGguguucguauggucUGAgguugcgugcGCGGUCGCCc -3'
miRNA:   3'- gaGCCUCU------------UGUGGU--------------AUU----------UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 138875 0.66 0.997719
Target:  5'- aUCGGAGAcgACCAUuucguCGG-CGCg -3'
miRNA:   3'- gAGCCUCUugUGGUAuuu--GCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 74491 0.67 0.994889
Target:  5'- gUUGcGAGAGCGCCAaAGGCGGcCagGCUg -3'
miRNA:   3'- gAGC-CUCUUGUGGUaUUUGCCaG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 98130 0.67 0.994889
Target:  5'- -aCGGAGGACGCaGUAAAC--UCGCUc -3'
miRNA:   3'- gaGCCUCUUGUGgUAUUUGccAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 60886 0.67 0.994074
Target:  5'- uCUCGGcGuACGCCGcGGugGGgccgaCGCCg -3'
miRNA:   3'- -GAGCCuCuUGUGGUaUUugCCa----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 59760 0.67 0.994074
Target:  5'- uCUCGGGGGGCacgaacugGCCGUGGcuguccACGGccgugucCGCCg -3'
miRNA:   3'- -GAGCCUCUUG--------UGGUAUU------UGCCa------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 101903 0.67 0.994074
Target:  5'- -gCGGAGAACACUacaaacaggGUGGACGG-CGa- -3'
miRNA:   3'- gaGCCUCUUGUGG---------UAUUUGCCaGCgg -5'
24355 3' -50.4 NC_005264.1 + 100168 0.67 0.995543
Target:  5'- aUCGGAcGAuccaggcGCGCCAacgaguuCGGUCGCg -3'
miRNA:   3'- gAGCCU-CU-------UGUGGUauuu---GCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 97312 0.67 0.995611
Target:  5'- aCUa-GAGGGCGCCccgGUGccaAGCaGGUCGCCg -3'
miRNA:   3'- -GAgcCUCUUGUGG---UAU---UUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 18525 0.67 0.995611
Target:  5'- aUCGG-GGGCGCCGUcucccccuGAgGGcgCGCCg -3'
miRNA:   3'- gAGCCuCUUGUGGUAu-------UUgCCa-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 82934 0.67 0.994889
Target:  5'- uCUUGGuuacauugcGAcguCGCCugcGACGGUCGCCg -3'
miRNA:   3'- -GAGCCu--------CUu--GUGGuauUUGCCAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.