miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 107635 0.73 0.900977
Target:  5'- --gGGAGAaugagucuGCGCCGacguuucGCGGUCGCCg -3'
miRNA:   3'- gagCCUCU--------UGUGGUauu----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 24618 0.73 0.900977
Target:  5'- -cCGGGGGACAgCAgcgacuGCGGUUGUCg -3'
miRNA:   3'- gaGCCUCUUGUgGUauu---UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 24691 0.72 0.907368
Target:  5'- cCUCGGA-AACGCCGaAGAUGGUCGgUa -3'
miRNA:   3'- -GAGCCUcUUGUGGUaUUUGCCAGCgG- -5'
24355 3' -50.4 NC_005264.1 + 7079 0.72 0.913514
Target:  5'- --gGGGGAACACCAgGAAUGGUaGCa -3'
miRNA:   3'- gagCCUCUUGUGGUaUUUGCCAgCGg -5'
24355 3' -50.4 NC_005264.1 + 383 0.72 0.925061
Target:  5'- uUUGGGGGgcaGCGCCGgc-GCGGUCGUg -3'
miRNA:   3'- gAGCCUCU---UGUGGUauuUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 95448 0.72 0.925061
Target:  5'- -cCGGAGAugcggcGCAUCGUAGACGa-CGCCg -3'
miRNA:   3'- gaGCCUCU------UGUGGUAUUUGCcaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46246 0.72 0.928866
Target:  5'- -cCGGAGAAgACCGcgccugggggcguuUAGG-GGUCGCCg -3'
miRNA:   3'- gaGCCUCUUgUGGU--------------AUUUgCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 37431 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 156458 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 142459 0.72 0.93046
Target:  5'- -gCGGGGGgaauuACugCGUuuGCGGUgGCCg -3'
miRNA:   3'- gaGCCUCU-----UGugGUAuuUGCCAgCGG- -5'
24355 3' -50.4 NC_005264.1 + 51020 0.71 0.935608
Target:  5'- -gCGGAGAACACUA-AGACGuuaaCGCCg -3'
miRNA:   3'- gaGCCUCUUGUGGUaUUUGCca--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 22039 0.71 0.94516
Target:  5'- uUCGGcuucAGAccgACGCCuUGGACGGUagCGCCg -3'
miRNA:   3'- gAGCC----UCU---UGUGGuAUUUGCCA--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 129195 0.71 0.953733
Target:  5'- gUCGGcuAGCACCGUcGACcaaccGUCGCCg -3'
miRNA:   3'- gAGCCucUUGUGGUAuUUGc----CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 88746 0.71 0.953733
Target:  5'- -gCGGaAGAACACCAgcugcACGG-CGCUg -3'
miRNA:   3'- gaGCC-UCUUGUGGUauu--UGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 43779 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 162805 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 22221 0.7 0.96414
Target:  5'- -gUGGAGucguCGCCucgucggcggucUGGGCGGUCGCCu -3'
miRNA:   3'- gaGCCUCuu--GUGGu-----------AUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 77731 0.7 0.96774
Target:  5'- -cCGGAGGACugCGcagaagcUGAcuACGG-CGCCg -3'
miRNA:   3'- gaGCCUCUUGugGU-------AUU--UGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 129425 0.7 0.968054
Target:  5'- uCUCGcGGGcguacucgcccAACAUCAcc-GCGGUCGCCa -3'
miRNA:   3'- -GAGC-CUC-----------UUGUGGUauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 78308 0.7 0.971076
Target:  5'- gUCGGGGAACAgCGcGAaauacauuucGCuGUCGCCg -3'
miRNA:   3'- gAGCCUCUUGUgGUaUU----------UGcCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.