miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 78308 0.7 0.971076
Target:  5'- gUCGGGGAACAgCGcGAaauacauuucGCuGUCGCCg -3'
miRNA:   3'- gAGCCUCUUGUgGUaUU----------UGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 162291 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 43264 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 57833 0.69 0.973887
Target:  5'- -cCaGAGAugGCCGgugcgcugcAAACGGUCGUCa -3'
miRNA:   3'- gaGcCUCUugUGGUa--------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 109108 0.69 0.976494
Target:  5'- -cCGGAGAcggGCACgAcgAGACGGacucguUCGCCg -3'
miRNA:   3'- gaGCCUCU---UGUGgUa-UUUGCC------AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 136720 0.69 0.983171
Target:  5'- uCUCGGcccGCGCCAcGAgccgcGCGGUgGCCa -3'
miRNA:   3'- -GAGCCucuUGUGGUaUU-----UGCCAgCGG- -5'
24355 3' -50.4 NC_005264.1 + 140609 0.69 0.983171
Target:  5'- --gGGGGAACACCAgcagcucaucgUAAGgGGUcCGUCg -3'
miRNA:   3'- gagCCUCUUGUGGU-----------AUUUgCCA-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 7665 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 126692 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 18579 0.68 0.985042
Target:  5'- -aCGGAGAACuCgGUGucgguGCGGUagcaGCCg -3'
miRNA:   3'- gaGCCUCUUGuGgUAUu----UGCCAg---CGG- -5'
24355 3' -50.4 NC_005264.1 + 142198 0.68 0.985042
Target:  5'- uUCGucuGGAcCGCCA---ACGGUCGCCc -3'
miRNA:   3'- gAGCc--UCUuGUGGUauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 109632 0.68 0.98675
Target:  5'- -gCGGGGGGCGC----GACGGUUGCa -3'
miRNA:   3'- gaGCCUCUUGUGguauUUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 39246 0.68 0.988304
Target:  5'- -cCGGccGAACGuaacaCAUGGACgGGUCGCCg -3'
miRNA:   3'- gaGCCu-CUUGUg----GUAUUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 147281 0.68 0.988304
Target:  5'- gCUCGGGGAGCcacaACaCGUAcACGGUCa-- -3'
miRNA:   3'- -GAGCCUCUUG----UG-GUAUuUGCCAGcgg -5'
24355 3' -50.4 NC_005264.1 + 331 0.68 0.988451
Target:  5'- -aUGGAGAGCACCAacaacaaccccuuGCGGgacaUGCCa -3'
miRNA:   3'- gaGCCUCUUGUGGUauu----------UGCCa---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 29680 0.68 0.988885
Target:  5'- aUCaGGGAGCGuCCAgccucgucaucCGGUCGCCu -3'
miRNA:   3'- gAGcCUCUUGU-GGUauuu-------GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 139065 0.68 0.989713
Target:  5'- -gCGGAG-GCGCCGguuccuuGCuGUCGCCu -3'
miRNA:   3'- gaGCCUCuUGUGGUauu----UGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 127333 0.68 0.989713
Target:  5'- -aCGG-GGGCACCugcgccGCGGcgUCGCCg -3'
miRNA:   3'- gaGCCuCUUGUGGuauu--UGCC--AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 125579 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 6552 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.