miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 51020 0.71 0.935608
Target:  5'- -gCGGAGAACACUA-AGACGuuaaCGCCg -3'
miRNA:   3'- gaGCCUCUUGUGGUaUUUGCca--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 57510 0.66 0.9967
Target:  5'- -cCGGuGAACACCuugauggcguGAUGGUUgGCCa -3'
miRNA:   3'- gaGCCuCUUGUGGuau-------UUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 57833 0.69 0.973887
Target:  5'- -cCaGAGAugGCCGgugcgcugcAAACGGUCGUCa -3'
miRNA:   3'- gaGcCUCUugUGGUa--------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58471 0.76 0.769354
Target:  5'- uCUCGucuGGGAACGCCu--GACGGUCgGCCc -3'
miRNA:   3'- -GAGC---CUCUUGUGGuauUUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 58757 0.67 0.992131
Target:  5'- uUCau-GAGCGCgAUGAugGGcUCGCCg -3'
miRNA:   3'- gAGccuCUUGUGgUAUUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58845 0.67 0.994889
Target:  5'- uCUCGGccAACAUCAU-GACGGUUucuucgGCCg -3'
miRNA:   3'- -GAGCCucUUGUGGUAuUUGCCAG------CGG- -5'
24355 3' -50.4 NC_005264.1 + 59760 0.67 0.994074
Target:  5'- uCUCGGGGGGCacgaacugGCCGUGGcuguccACGGccgugucCGCCg -3'
miRNA:   3'- -GAGCCUCUUG--------UGGUAUU------UGCCa------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 60029 0.66 0.998017
Target:  5'- -aCGGAG-GCGCCGcaUGGugGGggaaaagaauugCGCCa -3'
miRNA:   3'- gaGCCUCuUGUGGU--AUUugCCa-----------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 60886 0.67 0.994074
Target:  5'- uCUCGGcGuACGCCGcGGugGGgccgaCGCCg -3'
miRNA:   3'- -GAGCCuCuUGUGGUaUUugCCa----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 64769 0.73 0.897025
Target:  5'- -cCGGGGcACACCAUgcaacacuuauucagGAACGaGUUGCCg -3'
miRNA:   3'- gaGCCUCuUGUGGUA---------------UUUGC-CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 66007 0.66 0.997981
Target:  5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3'
miRNA:   3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5'
24355 3' -50.4 NC_005264.1 + 67910 0.68 0.989713
Target:  5'- -cCGGAGAuaaacauacGCACCAUucgggauccAGCGGggggaUCGCCu -3'
miRNA:   3'- gaGCCUCU---------UGUGGUAu--------UUGCC-----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 69219 0.67 0.993158
Target:  5'- -gCGGAGGACAgCuc-AGCGGccagcugCGCCa -3'
miRNA:   3'- gaGCCUCUUGUgGuauUUGCCa------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 70938 0.66 0.997719
Target:  5'- aCUCGGucucaaguacguGGAGCugCcUGGGCuGUCGCUc -3'
miRNA:   3'- -GAGCC------------UCUUGugGuAUUUGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 73998 0.67 0.994074
Target:  5'- -gCGccGAGCGuuGUAcauGCGGUCGCCg -3'
miRNA:   3'- gaGCcuCUUGUggUAUu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 74491 0.67 0.994889
Target:  5'- gUUGcGAGAGCGCCAaAGGCGGcCagGCUg -3'
miRNA:   3'- gAGC-CUCUUGUGGUaUUUGCCaG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 76246 0.76 0.769354
Target:  5'- gCUUGGGuGuggaGCCGUGAcuGCGGUCGCCa -3'
miRNA:   3'- -GAGCCU-Cuug-UGGUAUU--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 77731 0.7 0.96774
Target:  5'- -cCGGAGGACugCGcagaagcUGAcuACGG-CGCCg -3'
miRNA:   3'- gaGCCUCUUGugGU-------AUU--UGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 78308 0.7 0.971076
Target:  5'- gUCGGGGAACAgCGcGAaauacauuucGCuGUCGCCg -3'
miRNA:   3'- gAGCCUCUUGUgGUaUU----------UGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 82252 0.66 0.996248
Target:  5'- uUCGGGGcucgcgacaggcGGCACCGgagcgcGAAgGGUcCGCCg -3'
miRNA:   3'- gAGCCUC------------UUGUGGUa-----UUUgCCA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.