miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 145035 0.75 0.778913
Target:  5'- gUCGGAGGACGCaa-GAACGucacgaauGUCGCCa -3'
miRNA:   3'- gAGCCUCUUGUGguaUUUGC--------CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58471 0.76 0.769354
Target:  5'- uCUCGucuGGGAACGCCu--GACGGUCgGCCc -3'
miRNA:   3'- -GAGC---CUCUUGUGGuauUUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 86298 0.77 0.686004
Target:  5'- aUCGGGGGucuaauuuugccagAUACCgccgaagcggcgGUAGACGGUCGCCu -3'
miRNA:   3'- gAGCCUCU--------------UGUGG------------UAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 159682 0.78 0.626555
Target:  5'- -gCGGAGGGuCGCCGUuu-CGGUUGCCg -3'
miRNA:   3'- gaGCCUCUU-GUGGUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 383 0.72 0.925061
Target:  5'- uUUGGGGGgcaGCGCCGgc-GCGGUCGUg -3'
miRNA:   3'- gAGCCUCU---UGUGGUauuUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 95448 0.72 0.925061
Target:  5'- -cCGGAGAugcggcGCAUCGUAGACGa-CGCCg -3'
miRNA:   3'- gaGCCUCU------UGUGGUAUUUGCcaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 127333 0.68 0.989713
Target:  5'- -aCGG-GGGCACCugcgccGCGGcgUCGCCg -3'
miRNA:   3'- gaGCCuCUUGUGGuauu--UGCC--AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 331 0.68 0.988451
Target:  5'- -aUGGAGAGCACCAacaacaaccccuuGCGGgacaUGCCa -3'
miRNA:   3'- gaGCCUCUUGUGGUauu----------UGCCa---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 39246 0.68 0.988304
Target:  5'- -cCGGccGAACGuaacaCAUGGACgGGUCGCCg -3'
miRNA:   3'- gaGCCu-CUUGUg----GUAUUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 142198 0.68 0.985042
Target:  5'- uUCGucuGGAcCGCCA---ACGGUCGCCc -3'
miRNA:   3'- gAGCc--UCUuGUGGUauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 126692 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 162291 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 50260 0.7 0.971076
Target:  5'- cCUCuGGGGACGCCAUGGccGCGGagaucaccaaCGCCc -3'
miRNA:   3'- -GAGcCUCUUGUGGUAUU--UGCCa---------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 77731 0.7 0.96774
Target:  5'- -cCGGAGGACugCGcagaagcUGAcuACGG-CGCCg -3'
miRNA:   3'- gaGCCUCUUGugGU-------AUU--UGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 162805 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 22039 0.71 0.94516
Target:  5'- uUCGGcuucAGAccgACGCCuUGGACGGUagCGCCg -3'
miRNA:   3'- gAGCC----UCU---UGUGGuAUUUGCCA--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 51020 0.71 0.935608
Target:  5'- -gCGGAGAACACUA-AGACGuuaaCGCCg -3'
miRNA:   3'- gaGCCUCUUGUGGUaUUUGCca--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 156458 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 142459 0.72 0.93046
Target:  5'- -gCGGGGGgaauuACugCGUuuGCGGUgGCCg -3'
miRNA:   3'- gaGCCUCU-----UGugGUAuuUGCCAgCGG- -5'
24355 3' -50.4 NC_005264.1 + 141293 1.12 0.007789
Target:  5'- cCUCGGAGAACACCAUAAACGGUCGCCc -3'
miRNA:   3'- -GAGCCUCUUGUGGUAUUUGCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.