miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 6552 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 43629 0.67 0.995611
Target:  5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 14220 0.66 0.997719
Target:  5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3'
miRNA:   3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 67910 0.68 0.989713
Target:  5'- -cCGGAGAuaaacauacGCACCAUucgggauccAGCGGggggaUCGCCu -3'
miRNA:   3'- gaGCCUCU---------UGUGGUAu--------UUGCC-----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 66007 0.66 0.997981
Target:  5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3'
miRNA:   3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5'
24355 3' -50.4 NC_005264.1 + 35783 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 37245 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46246 0.72 0.928866
Target:  5'- -cCGGAGAAgACCGcgccugggggcguuUAGG-GGUCGCCg -3'
miRNA:   3'- gaGCCUCUUgUGGU--------------AUUUgCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 129195 0.71 0.953733
Target:  5'- gUCGGcuAGCACCGUcGACcaaccGUCGCCg -3'
miRNA:   3'- gAGCCucUUGUGGUAuUUGc----CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 43264 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 7665 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 109632 0.68 0.98675
Target:  5'- -gCGGGGGGCGC----GACGGUUGCa -3'
miRNA:   3'- gaGCCUCUUGUGguauUUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 8306 0.68 0.989713
Target:  5'- -aCGG-GGGCACCugcgccGCGGcgUCGCCg -3'
miRNA:   3'- gaGCCuCUUGUGGuauu--UGCC--AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 13481 0.68 0.990986
Target:  5'- aCUCGGGGGACAgCUcgGGAgaGGUCGaCUu -3'
miRNA:   3'- -GAGCCUCUUGU-GGuaUUUg-CCAGC-GG- -5'
24355 3' -50.4 NC_005264.1 + 113266 0.67 0.993158
Target:  5'- -gCGGcGuGCGCCGagaaggugAAGCGGUCGCUc -3'
miRNA:   3'- gaGCCuCuUGUGGUa-------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 122912 0.67 0.994074
Target:  5'- gUUGGAGAuC-CCAgAAGCGGUgCGCg -3'
miRNA:   3'- gAGCCUCUuGuGGUaUUUGCCA-GCGg -5'
24355 3' -50.4 NC_005264.1 + 58845 0.67 0.994889
Target:  5'- uCUCGGccAACAUCAU-GACGGUUucuucgGCCg -3'
miRNA:   3'- -GAGCCucUUGUGGUAuUUGCCAG------CGG- -5'
24355 3' -50.4 NC_005264.1 + 31530 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 99784 0.66 0.996248
Target:  5'- -cUGGAGAccgagaucaaGCgGCCGaggcGAUGGUCGCCg -3'
miRNA:   3'- gaGCCUCU----------UG-UGGUau--UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 44782 0.66 0.996806
Target:  5'- -gCGGcGAucguugccgACGCC----GCGGUCGCCg -3'
miRNA:   3'- gaGCCuCU---------UGUGGuauuUGCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.