miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 96287 0.67 0.994412
Target:  5'- -gCGGAGcuuguggaaaucgccGACGCCcgcaacGCGGUCGUCg -3'
miRNA:   3'- gaGCCUC---------------UUGUGGuauu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 43629 0.67 0.995611
Target:  5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 6453 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 66007 0.66 0.997981
Target:  5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3'
miRNA:   3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5'
24355 3' -50.4 NC_005264.1 + 67910 0.68 0.989713
Target:  5'- -cCGGAGAuaaacauacGCACCAUucgggauccAGCGGggggaUCGCCu -3'
miRNA:   3'- gaGCCUCU---------UGUGGUAu--------UUGCC-----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 26441 0.67 0.994074
Target:  5'- -gCGGAcGGGCGuuGU---CGGUCGCCa -3'
miRNA:   3'- gaGCCU-CUUGUggUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 118659 0.67 0.995876
Target:  5'- -gUGGAGGcuggaugcacuccacAUGCCAUuuacGCGGUUGCCc -3'
miRNA:   3'- gaGCCUCU---------------UGUGGUAuu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 60029 0.66 0.998017
Target:  5'- -aCGGAG-GCGCCGcaUGGugGGggaaaagaauugCGCCa -3'
miRNA:   3'- gaGCCUCuUGUGGU--AUUugCCa-----------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 73998 0.67 0.994074
Target:  5'- -gCGccGAGCGuuGUAcauGCGGUCGCCg -3'
miRNA:   3'- gaGCcuCUUGUggUAUu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 131627 0.66 0.998052
Target:  5'- -gCGGAGAagaacagauggucACGCCucggucuGCGGUgccCGCCg -3'
miRNA:   3'- gaGCCUCU-------------UGUGGuauu---UGCCA---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 142554 0.67 0.995611
Target:  5'- cCUCGGGGccgcaAGCGCgCA--GACGGUCcCCu -3'
miRNA:   3'- -GAGCCUC-----UUGUG-GUauUUGCCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 86580 0.67 0.994074
Target:  5'- aCUCuGGcGAuCugCGUGAgacacGCGGUCGUCg -3'
miRNA:   3'- -GAG-CCuCUuGugGUAUU-----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 161933 0.66 0.996248
Target:  5'- --aGGAGAuACACgAUAAuCGGuacgUCGCCu -3'
miRNA:   3'- gagCCUCU-UGUGgUAUUuGCC----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 57510 0.66 0.9967
Target:  5'- -cCGGuGAACACCuugauggcguGAUGGUUgGCCa -3'
miRNA:   3'- gaGCCuCUUGUGGuau-------UUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 154113 0.66 0.996806
Target:  5'- -aCGGGGGGCgaGCCG-AAACGG-CgGCCa -3'
miRNA:   3'- gaGCCUCUUG--UGGUaUUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 14220 0.66 0.997719
Target:  5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3'
miRNA:   3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 29680 0.68 0.988885
Target:  5'- aUCaGGGAGCGuCCAgccucgucaucCGGUCGCCu -3'
miRNA:   3'- gAGcCUCUUGU-GGUauuu-------GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 6552 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 13481 0.68 0.990986
Target:  5'- aCUCGGGGGACAgCUcgGGAgaGGUCGaCUu -3'
miRNA:   3'- -GAGCCUCUUGU-GGuaUUUg-CCAGC-GG- -5'
24355 3' -50.4 NC_005264.1 + 113266 0.67 0.993158
Target:  5'- -gCGGcGuGCGCCGagaaggugAAGCGGUCGCUc -3'
miRNA:   3'- gaGCCuCuUGUGGUa-------UUUGCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.