miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 149585 0.66 0.998086
Target:  5'- -gCGGAGGggggcugcucgAUGCCGagucuuuGCGGUCGCUg -3'
miRNA:   3'- gaGCCUCU-----------UGUGGUauu----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 118659 0.67 0.995876
Target:  5'- -gUGGAGGcuggaugcacuccacAUGCCAUuuacGCGGUUGCCc -3'
miRNA:   3'- gaGCCUCU---------------UGUGGUAuu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 43629 0.67 0.995611
Target:  5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 141293 1.12 0.007789
Target:  5'- cCUCGGAGAACACCAUAAACGGUCGCCc -3'
miRNA:   3'- -GAGCCUCUUGUGGUAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 14220 0.66 0.997719
Target:  5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3'
miRNA:   3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 87133 0.66 0.997471
Target:  5'- -gCGGGGcGCACCAgucuucgcgccgaaAGACGG-CGCUg -3'
miRNA:   3'- gaGCCUCuUGUGGUa-------------UUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154113 0.66 0.996806
Target:  5'- -aCGGGGGGCgaGCCG-AAACGG-CgGCCa -3'
miRNA:   3'- gaGCCUCUUG--UGGUaUUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 94654 0.66 0.996806
Target:  5'- -aUGGAGcACguaGCCAUGAACGuGccCGCCg -3'
miRNA:   3'- gaGCCUCuUG---UGGUAUUUGC-Ca-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 57510 0.66 0.9967
Target:  5'- -cCGGuGAACACCuugauggcguGAUGGUUgGCCa -3'
miRNA:   3'- gaGCCuCUUGUGGuau-------UUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 31530 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 99784 0.66 0.996248
Target:  5'- -cUGGAGAccgagaucaaGCgGCCGaggcGAUGGUCGCCg -3'
miRNA:   3'- gaGCCUCU----------UG-UGGUau--UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 6453 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 131627 0.66 0.998052
Target:  5'- -gCGGAGAagaacagauggucACGCCucggucuGCGGUgccCGCCg -3'
miRNA:   3'- gaGCCUCU-------------UGUGGuauu---UGCCA---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 161933 0.66 0.996248
Target:  5'- --aGGAGAuACACgAUAAuCGGuacgUCGCCu -3'
miRNA:   3'- gagCCUCU-UGUGgUAUUuGCC----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 60029 0.66 0.998017
Target:  5'- -aCGGAG-GCGCCGcaUGGugGGggaaaagaauugCGCCa -3'
miRNA:   3'- gaGCCUCuUGUGGU--AUUugCCa-----------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 44782 0.66 0.996806
Target:  5'- -gCGGcGAucguugccgACGCC----GCGGUCGCCg -3'
miRNA:   3'- gaGCCuCU---------UGUGGuauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 82252 0.66 0.996248
Target:  5'- uUCGGGGcucgcgacaggcGGCACCGgagcgcGAAgGGUcCGCCg -3'
miRNA:   3'- gAGCCUC------------UUGUGGUa-----UUUgCCA-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 142554 0.67 0.995611
Target:  5'- cCUCGGGGccgcaAGCGCgCA--GACGGUCcCCu -3'
miRNA:   3'- -GAGCCUC-----UUGUG-GUauUUGCCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 66007 0.66 0.997981
Target:  5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3'
miRNA:   3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5'
24355 3' -50.4 NC_005264.1 + 37245 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.