miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 141293 1.12 0.007789
Target:  5'- cCUCGGAGAACACCAUAAACGGUCGCCc -3'
miRNA:   3'- -GAGCCUCUUGUGGUAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 159682 0.78 0.626555
Target:  5'- -gCGGAGGGuCGCCGUuu-CGGUUGCCg -3'
miRNA:   3'- gaGCCUCUU-GUGGUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 40656 0.78 0.626555
Target:  5'- -gCGGAGGGuCGCCGUuu-CGGUUGCCg -3'
miRNA:   3'- gaGCCUCUU-GUGGUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 86298 0.77 0.686004
Target:  5'- aUCGGGGGucuaauuuugccagAUACCgccgaagcggcgGUAGACGGUCGCCu -3'
miRNA:   3'- gAGCCUCU--------------UGUGG------------UAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58471 0.76 0.769354
Target:  5'- uCUCGucuGGGAACGCCu--GACGGUCgGCCc -3'
miRNA:   3'- -GAGC---CUCUUGUGGuauUUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 76246 0.76 0.769354
Target:  5'- gCUUGGGuGuggaGCCGUGAcuGCGGUCGCCa -3'
miRNA:   3'- -GAGCCU-Cuug-UGGUAUU--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 145035 0.75 0.778913
Target:  5'- gUCGGAGGACGCaa-GAACGucacgaauGUCGCCa -3'
miRNA:   3'- gAGCCUCUUGUGguaUUUGC--------CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 138466 0.75 0.788334
Target:  5'- aCUCGGGGAcCAcuacuucguuCCGUAccugcGGCGGUUGCCg -3'
miRNA:   3'- -GAGCCUCUuGU----------GGUAU-----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 141234 0.75 0.796688
Target:  5'- aUUGGAGcgucacuAGCACCuAUAuuuCGGUCGCCg -3'
miRNA:   3'- gAGCCUC-------UUGUGG-UAUuu-GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 17291 0.75 0.806727
Target:  5'- -gCGGAGGGCugcCCAUcuaacuGAAUGGUCGCUg -3'
miRNA:   3'- gaGCCUCUUGu--GGUA------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 13262 0.75 0.814792
Target:  5'- aCUCGGAGGacgacgaggguucGCGCCAgcgAGGCGgGUCGUg -3'
miRNA:   3'- -GAGCCUCU-------------UGUGGUa--UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 132289 0.75 0.814792
Target:  5'- aCUCGGAGGacgacgaggguucGCGCCAgcgAGGCGgGUCGUg -3'
miRNA:   3'- -GAGCCUCU-------------UGUGGUa--UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 35457 0.75 0.824458
Target:  5'- -cCGGuaAGCAUCAgcGACGGUCGCCc -3'
miRNA:   3'- gaGCCucUUGUGGUauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154484 0.75 0.824458
Target:  5'- -cCGGuaAGCAUCAgcGACGGUCGCCc -3'
miRNA:   3'- gaGCCucUUGUGGUauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 124270 0.74 0.833053
Target:  5'- cCUCGGguacguuuAGAGCGCCGggAGGCGaGUCGCg -3'
miRNA:   3'- -GAGCC--------UCUUGUGGUa-UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 5243 0.74 0.833053
Target:  5'- cCUCGGguacguuuAGAGCGCCGggAGGCGaGUCGCg -3'
miRNA:   3'- -GAGCC--------UCUUGUGGUa-UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 21661 0.74 0.849664
Target:  5'- cCUCGGGGGuaaccGCAUCGgAAAUugaGGUCGCCg -3'
miRNA:   3'- -GAGCCUCU-----UGUGGUaUUUG---CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154809 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 35783 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 64769 0.73 0.897025
Target:  5'- -cCGGGGcACACCAUgcaacacuuauucagGAACGaGUUGCCg -3'
miRNA:   3'- gaGCCUCuUGUGGUA---------------UUUGC-CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.