miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 24691 0.72 0.907368
Target:  5'- cCUCGGA-AACGCCGaAGAUGGUCGgUa -3'
miRNA:   3'- -GAGCCUcUUGUGGUaUUUGCCAGCgG- -5'
24355 3' -50.4 NC_005264.1 + 26441 0.67 0.994074
Target:  5'- -gCGGAcGGGCGuuGU---CGGUCGCCa -3'
miRNA:   3'- gaGCCU-CUUGUggUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 29680 0.68 0.988885
Target:  5'- aUCaGGGAGCGuCCAgccucgucaucCGGUCGCCu -3'
miRNA:   3'- gAGcCUCUUGU-GGUauuu-------GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 31530 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 31779 0.67 0.993158
Target:  5'- uUCGcGGGcgcuuCGCCuaagggcGGCGGUCGCCg -3'
miRNA:   3'- gAGC-CUCuu---GUGGuau----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 35457 0.75 0.824458
Target:  5'- -cCGGuaAGCAUCAgcGACGGUCGCCc -3'
miRNA:   3'- gaGCCucUUGUGGUauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 35783 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 37245 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 37431 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 38034 0.67 0.994889
Target:  5'- cCUCGGuGGuGCAC----GACGGUCGCg -3'
miRNA:   3'- -GAGCCuCU-UGUGguauUUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 39246 0.68 0.988304
Target:  5'- -cCGGccGAACGuaacaCAUGGACgGGUCGCCg -3'
miRNA:   3'- gaGCCu-CUUGUg----GUAUUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 40656 0.78 0.626555
Target:  5'- -gCGGAGGGuCGCCGUuu-CGGUUGCCg -3'
miRNA:   3'- gaGCCUCUU-GUGGUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 43264 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 43629 0.67 0.995611
Target:  5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 43779 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 44782 0.66 0.996806
Target:  5'- -gCGGcGAucguugccgACGCC----GCGGUCGCCg -3'
miRNA:   3'- gaGCCuCU---------UGUGGuauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46246 0.72 0.928866
Target:  5'- -cCGGAGAAgACCGcgccugggggcguuUAGG-GGUCGCCg -3'
miRNA:   3'- gaGCCUCUUgUGGU--------------AUUUgCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46377 0.66 0.997719
Target:  5'- -gCGcAGGACACCgAUAcGCGgGUCGUCa -3'
miRNA:   3'- gaGCcUCUUGUGG-UAUuUGC-CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 47167 0.67 0.993158
Target:  5'- gCUCGuGuuGAACGCCuccucGACGGUCaaGCCu -3'
miRNA:   3'- -GAGC-Cu-CUUGUGGuau--UUGCCAG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 50260 0.7 0.971076
Target:  5'- cCUCuGGGGACGCCAUGGccGCGGagaucaccaaCGCCc -3'
miRNA:   3'- -GAGcCUCUUGUGGUAUU--UGCCa---------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.