miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 142198 0.68 0.985042
Target:  5'- uUCGucuGGAcCGCCA---ACGGUCGCCc -3'
miRNA:   3'- gAGCc--UCUuGUGGUauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 141293 1.12 0.007789
Target:  5'- cCUCGGAGAACACCAUAAACGGUCGCCc -3'
miRNA:   3'- -GAGCCUCUUGUGGUAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 141234 0.75 0.796688
Target:  5'- aUUGGAGcgucacuAGCACCuAUAuuuCGGUCGCCg -3'
miRNA:   3'- gAGCCUC-------UUGUGG-UAUuu-GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 140609 0.69 0.983171
Target:  5'- --gGGGGAACACCAgcagcucaucgUAAGgGGUcCGUCg -3'
miRNA:   3'- gagCCUCUUGUGGU-----------AUUUgCCA-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 139065 0.68 0.989713
Target:  5'- -gCGGAG-GCGCCGguuccuuGCuGUCGCCu -3'
miRNA:   3'- gaGCCUCuUGUGGUauu----UGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 138875 0.66 0.997719
Target:  5'- aUCGGAGAcgACCAUuucguCGG-CGCg -3'
miRNA:   3'- gAGCCUCUugUGGUAuuu--GCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 138466 0.75 0.788334
Target:  5'- aCUCGGGGAcCAcuacuucguuCCGUAccugcGGCGGUUGCCg -3'
miRNA:   3'- -GAGCCUCUuGU----------GGUAU-----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 136720 0.69 0.983171
Target:  5'- uCUCGGcccGCGCCAcGAgccgcGCGGUgGCCa -3'
miRNA:   3'- -GAGCCucuUGUGGUaUU-----UGCCAgCGG- -5'
24355 3' -50.4 NC_005264.1 + 132508 0.68 0.990986
Target:  5'- aCUCGGGGGACAgCUcgGGAgaGGUCGaCUu -3'
miRNA:   3'- -GAGCCUCUUGU-GGuaUUUg-CCAGC-GG- -5'
24355 3' -50.4 NC_005264.1 + 132289 0.75 0.814792
Target:  5'- aCUCGGAGGacgacgaggguucGCGCCAgcgAGGCGgGUCGUg -3'
miRNA:   3'- -GAGCCUCU-------------UGUGGUa--UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 131627 0.66 0.998052
Target:  5'- -gCGGAGAagaacagauggucACGCCucggucuGCGGUgccCGCCg -3'
miRNA:   3'- gaGCCUCU-------------UGUGGuauu---UGCCA---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 129425 0.7 0.968054
Target:  5'- uCUCGcGGGcguacucgcccAACAUCAcc-GCGGUCGCCa -3'
miRNA:   3'- -GAGC-CUC-----------UUGUGGUauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 129195 0.71 0.953733
Target:  5'- gUCGGcuAGCACCGUcGACcaaccGUCGCCg -3'
miRNA:   3'- gAGCCucUUGUGGUAuUUGc----CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 127333 0.68 0.989713
Target:  5'- -aCGG-GGGCACCugcgccGCGGcgUCGCCg -3'
miRNA:   3'- gaGCCuCUUGUGGuauu--UGCC--AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 126692 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 125635 0.67 0.994074
Target:  5'- -cCGGucGGGAguCCAUgGAGCGG-CGCCg -3'
miRNA:   3'- gaGCC--UCUUguGGUA-UUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 125579 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 125480 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 124358 0.68 0.990986
Target:  5'- -aCGGGGAGa--CG-AAGCGGUCGCUc -3'
miRNA:   3'- gaGCCUCUUgugGUaUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 124270 0.74 0.833053
Target:  5'- cCUCGGguacguuuAGAGCGCCGggAGGCGaGUCGCg -3'
miRNA:   3'- -GAGCC--------UCUUGUGGUa-UUUGC-CAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.