miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 162805 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 162656 0.66 0.996423
Target:  5'- gCUCGGaAGcGCGCCGgcgggucguagguguACGGUCGgCg -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauu------------UGCCAGCgG- -5'
24355 3' -50.4 NC_005264.1 + 162291 0.69 0.973887
Target:  5'- gCUCGGgcauaggggagGGAACGCCGcgggucUGAuCGGUCgGCCu -3'
miRNA:   3'- -GAGCC-----------UCUUGUGGU------AUUuGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 161933 0.66 0.996248
Target:  5'- --aGGAGAuACACgAUAAuCGGuacgUCGCCu -3'
miRNA:   3'- gagCCUCU-UGUGgUAUUuGCC----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 159682 0.78 0.626555
Target:  5'- -gCGGAGGGuCGCCGUuu-CGGUUGCCg -3'
miRNA:   3'- gaGCCUCUU-GUGGUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 157061 0.67 0.994889
Target:  5'- cCUCGGuGGuGCAC----GACGGUCGCg -3'
miRNA:   3'- -GAGCCuCU-UGUGguauUUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 156458 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 156272 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154809 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154484 0.75 0.824458
Target:  5'- -cCGGuaAGCAUCAgcGACGGUCGCCc -3'
miRNA:   3'- gaGCCucUUGUGGUauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154113 0.66 0.996806
Target:  5'- -aCGGGGGGCgaGCCG-AAACGG-CgGCCa -3'
miRNA:   3'- gaGCCUCUUG--UGGUaUUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 150805 0.67 0.993158
Target:  5'- uUCGcGGGcgcuuCGCCuaagggcGGCGGUCGCCg -3'
miRNA:   3'- gAGC-CUCuu---GUGGuau----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 150557 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 149585 0.66 0.998086
Target:  5'- -gCGGAGGggggcugcucgAUGCCGagucuuuGCGGUCGCUg -3'
miRNA:   3'- gaGCCUCU-----------UGUGGUauu----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 148297 0.66 0.997981
Target:  5'- -cUGGAGAccgcgcgcgugcGCGCCGguguucguauggucUGAgguugcgugcGCGGUCGCCc -3'
miRNA:   3'- gaGCCUCU------------UGUGGU--------------AUU----------UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 147281 0.68 0.988304
Target:  5'- gCUCGGGGAGCcacaACaCGUAcACGGUCa-- -3'
miRNA:   3'- -GAGCCUCUUG----UG-GUAUuUGCCAGcgg -5'
24355 3' -50.4 NC_005264.1 + 146824 0.66 0.996248
Target:  5'- -aCGGAG-GCGC----GGCGGUCGUCg -3'
miRNA:   3'- gaGCCUCuUGUGguauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 145035 0.75 0.778913
Target:  5'- gUCGGAGGACGCaa-GAACGucacgaauGUCGCCa -3'
miRNA:   3'- gAGCCUCUUGUGguaUUUGC--------CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 142554 0.67 0.995611
Target:  5'- cCUCGGGGccgcaAGCGCgCA--GACGGUCcCCu -3'
miRNA:   3'- -GAGCCUC-----UUGUG-GUauUUGCCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 142459 0.72 0.93046
Target:  5'- -gCGGGGGgaauuACugCGUuuGCGGUgGCCg -3'
miRNA:   3'- gaGCCUCU-----UGugGUAuuUGCCAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.