miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 74491 0.67 0.994889
Target:  5'- gUUGcGAGAGCGCCAaAGGCGGcCagGCUg -3'
miRNA:   3'- gAGC-CUCUUGUGGUaUUUGCCaG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 58845 0.67 0.994889
Target:  5'- uCUCGGccAACAUCAU-GACGGUUucuucgGCCg -3'
miRNA:   3'- -GAGCCucUUGUGGUAuUUGCCAG------CGG- -5'
24355 3' -50.4 NC_005264.1 + 98130 0.67 0.994889
Target:  5'- -aCGGAGGACGCaGUAAAC--UCGCUc -3'
miRNA:   3'- gaGCCUCUUGUGgUAUUUGccAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 96287 0.67 0.994412
Target:  5'- -gCGGAGcuuguggaaaucgccGACGCCcgcaacGCGGUCGUCg -3'
miRNA:   3'- gaGCCUC---------------UUGUGGuauu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 73998 0.67 0.994074
Target:  5'- -gCGccGAGCGuuGUAcauGCGGUCGCCg -3'
miRNA:   3'- gaGCcuCUUGUggUAUu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 60886 0.67 0.994074
Target:  5'- uCUCGGcGuACGCCGcGGugGGgccgaCGCCg -3'
miRNA:   3'- -GAGCCuCuUGUGGUaUUugCCa----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 122912 0.67 0.994074
Target:  5'- gUUGGAGAuC-CCAgAAGCGGUgCGCg -3'
miRNA:   3'- gAGCCUCUuGuGGUaUUUGCCA-GCGg -5'
24355 3' -50.4 NC_005264.1 + 125635 0.67 0.994074
Target:  5'- -cCGGucGGGAguCCAUgGAGCGG-CGCCg -3'
miRNA:   3'- gaGCC--UCUUguGGUA-UUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 26441 0.67 0.994074
Target:  5'- -gCGGAcGGGCGuuGU---CGGUCGCCa -3'
miRNA:   3'- gaGCCU-CUUGUggUAuuuGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 86580 0.67 0.994074
Target:  5'- aCUCuGGcGAuCugCGUGAgacacGCGGUCGUCg -3'
miRNA:   3'- -GAG-CCuCUuGugGUAUU-----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 101903 0.67 0.994074
Target:  5'- -gCGGAGAACACUacaaacaggGUGGACGG-CGa- -3'
miRNA:   3'- gaGCCUCUUGUGG---------UAUUUGCCaGCgg -5'
24355 3' -50.4 NC_005264.1 + 59760 0.67 0.994074
Target:  5'- uCUCGGGGGGCacgaacugGCCGUGGcuguccACGGccgugucCGCCg -3'
miRNA:   3'- -GAGCCUCUUG--------UGGUAUU------UGCCa------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 69219 0.67 0.993158
Target:  5'- -gCGGAGGACAgCuc-AGCGGccagcugCGCCa -3'
miRNA:   3'- gaGCCUCUUGUgGuauUUGCCa------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 47167 0.67 0.993158
Target:  5'- gCUCGuGuuGAACGCCuccucGACGGUCaaGCCu -3'
miRNA:   3'- -GAGC-Cu-CUUGUGGuau--UUGCCAG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 31779 0.67 0.993158
Target:  5'- uUCGcGGGcgcuuCGCCuaagggcGGCGGUCGCCg -3'
miRNA:   3'- gAGC-CUCuu---GUGGuau----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 113266 0.67 0.993158
Target:  5'- -gCGGcGuGCGCCGagaaggugAAGCGGUCGCUc -3'
miRNA:   3'- gaGCCuCuUGUGGUa-------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 150805 0.67 0.993158
Target:  5'- uUCGcGGGcgcuuCGCCuaagggcGGCGGUCGCCg -3'
miRNA:   3'- gAGC-CUCuu---GUGGuau----UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58757 0.67 0.992131
Target:  5'- uUCau-GAGCGCgAUGAugGGcUCGCCg -3'
miRNA:   3'- gAGccuCUUGUGgUAUUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 124358 0.68 0.990986
Target:  5'- -aCGGGGAGa--CG-AAGCGGUCGCUc -3'
miRNA:   3'- gaGCCUCUUgugGUaUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 132508 0.68 0.990986
Target:  5'- aCUCGGGGGACAgCUcgGGAgaGGUCGaCUu -3'
miRNA:   3'- -GAGCCUCUUGU-GGuaUUUg-CCAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.