Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24356 | 3' | -56.8 | NC_005264.1 | + | 25605 | 0.66 | 0.904899 |
Target: 5'- gCGCCgGGCCG-GCGUUGCggaacacggcggcgGUGGGg -3' miRNA: 3'- gGCGGgUCGGUaCGUAAUGga------------CGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 41424 | 0.66 | 0.898011 |
Target: 5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3' miRNA: 3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 65782 | 0.66 | 0.91033 |
Target: 5'- uCCGCCUcacggAGaCCAUGCGcuuaucgACUUGCGcGGc -3' miRNA: 3'- -GGCGGG-----UC-GGUACGUaa-----UGGACGC-CC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 137824 | 0.66 | 0.91033 |
Target: 5'- gCGCCUcaggagAGgCAUGCAgcGCCUGagccgcaGGGg -3' miRNA: 3'- gGCGGG------UCgGUACGUaaUGGACg------CCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 87623 | 0.66 | 0.91033 |
Target: 5'- gCCGCCgCgcagGGCCgAUGCA--GCCgcGUGGGg -3' miRNA: 3'- -GGCGG-G----UCGG-UACGUaaUGGa-CGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 38114 | 0.66 | 0.91033 |
Target: 5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3' miRNA: 3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 157141 | 0.66 | 0.91033 |
Target: 5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3' miRNA: 3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 34916 | 0.66 | 0.903667 |
Target: 5'- cCC-CCCAGCCucuguucgugucaGUGuCGUaAUCUGUGGGc -3' miRNA: 3'- -GGcGGGUCGG-------------UAC-GUAaUGGACGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 104937 | 0.66 | 0.903047 |
Target: 5'- aCC-CCCAGCCGUGCcaagcgccgaGCCUcGUGGc -3' miRNA: 3'- -GGcGGGUCGGUACGuaa-------UGGA-CGCCc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 28753 | 0.66 | 0.91033 |
Target: 5'- gCGCCCAGaCGUGCucUAgCUGCGc- -3' miRNA: 3'- gGCGGGUCgGUACGuaAUgGACGCcc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 101487 | 0.66 | 0.898011 |
Target: 5'- aCGCUuugaCGGCCAUGCGggAgUUGCacGGGg -3' miRNA: 3'- gGCGG----GUCGGUACGUaaUgGACG--CCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 1445 | 0.67 | 0.863349 |
Target: 5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3' miRNA: 3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 39209 | 0.67 | 0.863349 |
Target: 5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3' miRNA: 3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 79397 | 0.67 | 0.863349 |
Target: 5'- aCCGCCgCGGgCGUgGCGagGCCgcgGCGGa -3' miRNA: 3'- -GGCGG-GUCgGUA-CGUaaUGGa--CGCCc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 112591 | 0.67 | 0.831953 |
Target: 5'- gCCGCCgCGGCagGUGCAcaaACUgggaGCGGGg -3' miRNA: 3'- -GGCGG-GUCGg-UACGUaa-UGGa---CGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 65420 | 0.67 | 0.838473 |
Target: 5'- gCGCCCuggucaaggauuguGUCGagcacguuuugacucUGCAcgGCCUGCGGGc -3' miRNA: 3'- gGCGGGu-------------CGGU---------------ACGUaaUGGACGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 138474 | 0.67 | 0.848032 |
Target: 5'- gCCGCgaagCCGGUCAUGCcagAgCgGCGGGg -3' miRNA: 3'- -GGCG----GGUCGGUACGuaaUgGaCGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 17113 | 0.67 | 0.855789 |
Target: 5'- cCCGCagcagCAGCUAUGCu---UCUGCGGu -3' miRNA: 3'- -GGCGg----GUCGGUACGuaauGGACGCCc -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 120472 | 0.67 | 0.863349 |
Target: 5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3' miRNA: 3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5' |
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24356 | 3' | -56.8 | NC_005264.1 | + | 158236 | 0.67 | 0.863349 |
Target: 5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3' miRNA: 3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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