miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 59864 0.69 0.750815
Target:  5'- gCCGCCaCGGUCAUGCuagcUGCUUacggucacgcaucGCGGGc -3'
miRNA:   3'- -GGCGG-GUCGGUACGua--AUGGA-------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 9717 0.69 0.751764
Target:  5'- gCCGCUgAGCCAUugugcccgccGCGgcaaaCUGCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUA----------CGUaaug-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 128743 0.69 0.751764
Target:  5'- gCCGCUgAGCCAUugugcccgccGCGgcaaaCUGCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUA----------CGUaaug-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 46563 0.69 0.75366
Target:  5'- gCCGCCCGcGCCAcggcuuccaagucgcGCGUgcggaggcucugucCCUGCGGGg -3'
miRNA:   3'- -GGCGGGU-CGGUa--------------CGUAau------------GGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 3968 0.69 0.761199
Target:  5'- gCCGCgCCGGCCG-GCuUUACCgccaGCaGGGc -3'
miRNA:   3'- -GGCG-GGUCGGUaCGuAAUGGa---CG-CCC- -5'
24356 3' -56.8 NC_005264.1 + 158562 0.69 0.770522
Target:  5'- aCUGgCCAGCCAUGCAg-GCCgaacagacucgcUGCGcGGc -3'
miRNA:   3'- -GGCgGGUCGGUACGUaaUGG------------ACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 24634 0.69 0.770522
Target:  5'- aCCGCgCAGCgCAUGCuuaauccccacgGUUcuggccACCUGCGGu -3'
miRNA:   3'- -GGCGgGUCG-GUACG------------UAA------UGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 70989 0.68 0.7888
Target:  5'- gUCGCCCGGUC--GCAggGgCUGCGuGGg -3'
miRNA:   3'- -GGCGGGUCGGuaCGUaaUgGACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 126091 0.68 0.797738
Target:  5'- aCgGCgCCGGCCGgcGCcgUcGCgCUGCGGGg -3'
miRNA:   3'- -GgCG-GGUCGGUa-CGuaA-UG-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 7064 0.68 0.797738
Target:  5'- aCgGCgCCGGCCGgcGCcgUcGCgCUGCGGGg -3'
miRNA:   3'- -GgCG-GGUCGGUa-CGuaA-UG-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 122994 0.68 0.80653
Target:  5'- gCCGCgCCGGCCG-GCuUUACCgccaaGCaGGGc -3'
miRNA:   3'- -GGCG-GGUCGGUaCGuAAUGGa----CG-CCC- -5'
24356 3' -56.8 NC_005264.1 + 81677 0.68 0.815168
Target:  5'- gUCGuuCCUGGCCGUggugaucaGCGcgUGCCUGUGGGg -3'
miRNA:   3'- -GGC--GGGUCGGUA--------CGUa-AUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 89234 0.68 0.815168
Target:  5'- aCGCCCAGCag------GCCUGCGGc -3'
miRNA:   3'- gGCGGGUCGguacguaaUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 69846 0.68 0.815168
Target:  5'- gCCGCCCuGCUugggGCAUcGCCccuacgGCGGa -3'
miRNA:   3'- -GGCGGGuCGGua--CGUAaUGGa-----CGCCc -5'
24356 3' -56.8 NC_005264.1 + 39478 0.68 0.823646
Target:  5'- gCGCUCAGCCGccagggGCAg-GCCUGCGc- -3'
miRNA:   3'- gGCGGGUCGGUa-----CGUaaUGGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 59970 0.68 0.823646
Target:  5'- gCCGCUCAGCCAcgcgGCGgugGCC-GCGa- -3'
miRNA:   3'- -GGCGGGUCGGUa---CGUaa-UGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 121414 0.68 0.823646
Target:  5'- gUCGCCCgcaggAGCCcgGCGccgGCCUGCcuaGGa -3'
miRNA:   3'- -GGCGGG-----UCGGuaCGUaa-UGGACGc--CC- -5'
24356 3' -56.8 NC_005264.1 + 2387 0.68 0.823646
Target:  5'- gUCGCCCgcaggAGCCcgGCGccgGCCUGCcuaGGa -3'
miRNA:   3'- -GGCGGG-----UCGGuaCGUaa-UGGACGc--CC- -5'
24356 3' -56.8 NC_005264.1 + 157365 0.68 0.823646
Target:  5'- -gGCCCuGGCCGUGa--UGCUgggcgGCGGGg -3'
miRNA:   3'- ggCGGG-UCGGUACguaAUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 158505 0.68 0.823646
Target:  5'- gCGCUCAGCCGccagggGCAg-GCCUGCGc- -3'
miRNA:   3'- gGCGGGUCGGUa-----CGUaaUGGACGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.