miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 140316 1.13 0.001505
Target:  5'- cCCGCCCAGCCAUGCAUUACCUGCGGGg -3'
miRNA:   3'- -GGCGGGUCGGUACGUAAUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 29579 0.78 0.29782
Target:  5'- gCCGCUCGGCC-UGU-UUGCCUGCGGc -3'
miRNA:   3'- -GGCGGGUCGGuACGuAAUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 53228 0.76 0.380028
Target:  5'- cCCGCCCAcGCCAuuUGCuuuccgUGCCccGCGGGc -3'
miRNA:   3'- -GGCGGGU-CGGU--ACGua----AUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 79226 0.76 0.380028
Target:  5'- gUCGCUUGGCCGUGCGcUACCacgaugaaacUGCGGGc -3'
miRNA:   3'- -GGCGGGUCGGUACGUaAUGG----------ACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 68240 0.76 0.388216
Target:  5'- aCCGCCaAGCCAUGCccgcGCC-GCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUACGuaa-UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 22482 0.72 0.572781
Target:  5'- uUCGCUCGGCCuaucGCAUca-CUGCGGGc -3'
miRNA:   3'- -GGCGGGUCGGua--CGUAaugGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 84070 0.72 0.592786
Target:  5'- aCCGCCCccuGGCuCAUGCGgaGCa-GCGGGc -3'
miRNA:   3'- -GGCGGG---UCG-GUACGUaaUGgaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 16476 0.71 0.653242
Target:  5'- aCGaCgCAGCC--GCGgugGCCUGCGGGg -3'
miRNA:   3'- gGC-GgGUCGGuaCGUaa-UGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 138774 0.71 0.663306
Target:  5'- gCGCCUGGCCGUGCuGUUGgCUGUGu- -3'
miRNA:   3'- gGCGGGUCGGUACG-UAAUgGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 66472 0.7 0.683352
Target:  5'- aCCGCCgCGGCCAgacuCAaUGCUUgGCGGGc -3'
miRNA:   3'- -GGCGG-GUCGGUac--GUaAUGGA-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 17775 0.7 0.700265
Target:  5'- gCUGCCCGGCCcgGCuUcuagagcgccaaggUACCUgGCGGu -3'
miRNA:   3'- -GGCGGGUCGGuaCGuA--------------AUGGA-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 101032 0.7 0.722883
Target:  5'- aCUGCCCGGCgAUGCccgcgGCCcgGUGGa -3'
miRNA:   3'- -GGCGGGUCGgUACGuaa--UGGa-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 64404 0.7 0.722883
Target:  5'- -aGCCCGGCCAagGCcgacGCC-GCGGGc -3'
miRNA:   3'- ggCGGGUCGGUa-CGuaa-UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 75723 0.69 0.730661
Target:  5'- gCGCCCcgcgggcgccggaGGCCAgucugggUGCGUUACCcGCGaGGc -3'
miRNA:   3'- gGCGGG-------------UCGGU-------ACGUAAUGGaCGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 52946 0.69 0.732598
Target:  5'- gCGCCC-GCgGcGCAUUGCgCcGCGGGg -3'
miRNA:   3'- gGCGGGuCGgUaCGUAAUG-GaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 67519 0.69 0.732598
Target:  5'- gCGCCCGGCggcggcaaucucCAUGCGcUGCCguaugGCGGc -3'
miRNA:   3'- gGCGGGUCG------------GUACGUaAUGGa----CGCCc -5'
24356 3' -56.8 NC_005264.1 + 71742 0.69 0.732598
Target:  5'- uCCGCgaCAGCCAUcGCGUUacgacuagccgACCUGCuGGc -3'
miRNA:   3'- -GGCGg-GUCGGUA-CGUAA-----------UGGACGcCC- -5'
24356 3' -56.8 NC_005264.1 + 31036 0.69 0.742228
Target:  5'- gCCGCCUAGCgguCGUGCGgcUGCgUUGCGGa -3'
miRNA:   3'- -GGCGGGUCG---GUACGUa-AUG-GACGCCc -5'
24356 3' -56.8 NC_005264.1 + 150063 0.69 0.742228
Target:  5'- gCCGCCUAGCgguCGUGCGgcUGCgUUGCGGa -3'
miRNA:   3'- -GGCGGGUCG---GUACGUa-AUG-GACGCCc -5'
24356 3' -56.8 NC_005264.1 + 104848 0.69 0.742228
Target:  5'- gCCGCUgAGCCAcgGCc--GCCgcGCGGGg -3'
miRNA:   3'- -GGCGGgUCGGUa-CGuaaUGGa-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.