miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 158505 0.68 0.823646
Target:  5'- gCGCUCAGCCGccagggGCAg-GCCUGCGc- -3'
miRNA:   3'- gGCGGGUCGGUa-----CGUaaUGGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 46563 0.69 0.75366
Target:  5'- gCCGCCCGcGCCAcggcuuccaagucgcGCGUgcggaggcucugucCCUGCGGGg -3'
miRNA:   3'- -GGCGGGU-CGGUa--------------CGUAau------------GGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 126091 0.68 0.797738
Target:  5'- aCgGCgCCGGCCGgcGCcgUcGCgCUGCGGGg -3'
miRNA:   3'- -GgCG-GGUCGGUa-CGuaA-UG-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 122994 0.68 0.80653
Target:  5'- gCCGCgCCGGCCG-GCuUUACCgccaaGCaGGGc -3'
miRNA:   3'- -GGCG-GGUCGGUaCGuAAUGGa----CG-CCC- -5'
24356 3' -56.8 NC_005264.1 + 69846 0.68 0.815168
Target:  5'- gCCGCCCuGCUugggGCAUcGCCccuacgGCGGa -3'
miRNA:   3'- -GGCGGGuCGGua--CGUAaUGGa-----CGCCc -5'
24356 3' -56.8 NC_005264.1 + 81677 0.68 0.815168
Target:  5'- gUCGuuCCUGGCCGUggugaucaGCGcgUGCCUGUGGGg -3'
miRNA:   3'- -GGC--GGGUCGGUA--------CGUa-AUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 89234 0.68 0.815168
Target:  5'- aCGCCCAGCag------GCCUGCGGc -3'
miRNA:   3'- gGCGGGUCGguacguaaUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 59970 0.68 0.823646
Target:  5'- gCCGCUCAGCCAcgcgGCGgugGCC-GCGa- -3'
miRNA:   3'- -GGCGGGUCGGUa---CGUaa-UGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 121414 0.68 0.823646
Target:  5'- gUCGCCCgcaggAGCCcgGCGccgGCCUGCcuaGGa -3'
miRNA:   3'- -GGCGGG-----UCGGuaCGUaa-UGGACGc--CC- -5'
24356 3' -56.8 NC_005264.1 + 128743 0.69 0.751764
Target:  5'- gCCGCUgAGCCAUugugcccgccGCGgcaaaCUGCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUA----------CGUaaug-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 59864 0.69 0.750815
Target:  5'- gCCGCCaCGGUCAUGCuagcUGCUUacggucacgcaucGCGGGc -3'
miRNA:   3'- -GGCGG-GUCGGUACGua--AUGGA-------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 150063 0.69 0.742228
Target:  5'- gCCGCCUAGCgguCGUGCGgcUGCgUUGCGGa -3'
miRNA:   3'- -GGCGGGUCG---GUACGUa-AUG-GACGCCc -5'
24356 3' -56.8 NC_005264.1 + 53228 0.76 0.380028
Target:  5'- cCCGCCCAcGCCAuuUGCuuuccgUGCCccGCGGGc -3'
miRNA:   3'- -GGCGGGU-CGGU--ACGua----AUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 68240 0.76 0.388216
Target:  5'- aCCGCCaAGCCAUGCccgcGCC-GCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUACGuaa-UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 22482 0.72 0.572781
Target:  5'- uUCGCUCGGCCuaucGCAUca-CUGCGGGc -3'
miRNA:   3'- -GGCGGGUCGGua--CGUAaugGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 17775 0.7 0.700265
Target:  5'- gCUGCCCGGCCcgGCuUcuagagcgccaaggUACCUgGCGGu -3'
miRNA:   3'- -GGCGGGUCGGuaCGuA--------------AUGGA-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 64404 0.7 0.722883
Target:  5'- -aGCCCGGCCAagGCcgacGCC-GCGGGc -3'
miRNA:   3'- ggCGGGUCGGUa-CGuaa-UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 75723 0.69 0.730661
Target:  5'- gCGCCCcgcgggcgccggaGGCCAgucugggUGCGUUACCcGCGaGGc -3'
miRNA:   3'- gGCGGG-------------UCGGU-------ACGUAAUGGaCGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 67519 0.69 0.732598
Target:  5'- gCGCCCGGCggcggcaaucucCAUGCGcUGCCguaugGCGGc -3'
miRNA:   3'- gGCGGGUCG------------GUACGUaAUGGa----CGCCc -5'
24356 3' -56.8 NC_005264.1 + 52946 0.69 0.732598
Target:  5'- gCGCCC-GCgGcGCAUUGCgCcGCGGGg -3'
miRNA:   3'- gGCGGGuCGgUaCGUAAUG-GaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.