miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 38114 0.66 0.91033
Target:  5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3'
miRNA:   3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 39209 0.67 0.863349
Target:  5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3'
miRNA:   3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 127810 0.67 0.855789
Target:  5'- gUCGCgCgAGCCAUcucccgacaGCGUUGCCUccGCGGcGg -3'
miRNA:   3'- -GGCG-GgUCGGUA---------CGUAAUGGA--CGCC-C- -5'
24356 3' -56.8 NC_005264.1 + 140316 1.13 0.001505
Target:  5'- cCCGCCCAGCCAUGCAUUACCUGCGGGg -3'
miRNA:   3'- -GGCGGGUCGGUACGUAAUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 25605 0.66 0.904899
Target:  5'- gCGCCgGGCCG-GCGUUGCggaacacggcggcgGUGGGg -3'
miRNA:   3'- gGCGGgUCGGUaCGUAAUGga------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 75408 0.66 0.904284
Target:  5'- uCUGCgCGGCCGcggGCAgugUACg-GCGGGc -3'
miRNA:   3'- -GGCGgGUCGGUa--CGUa--AUGgaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 34916 0.66 0.903667
Target:  5'- cCC-CCCAGCCucuguucgugucaGUGuCGUaAUCUGUGGGc -3'
miRNA:   3'- -GGcGGGUCGG-------------UAC-GUAaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 104937 0.66 0.903047
Target:  5'- aCC-CCCAGCCGUGCcaagcgccgaGCCUcGUGGc -3'
miRNA:   3'- -GGcGGGUCGGUACGuaa-------UGGA-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 42267 0.66 0.891513
Target:  5'- cCCGCCUAuuGCCGgcGCGgucaacGCC-GCGGGg -3'
miRNA:   3'- -GGCGGGU--CGGUa-CGUaa----UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 79397 0.67 0.863349
Target:  5'- aCCGCCgCGGgCGUgGCGagGCCgcgGCGGa -3'
miRNA:   3'- -GGCGG-GUCgGUA-CGUaaUGGa--CGCCc -5'
24356 3' -56.8 NC_005264.1 + 82798 0.66 0.884793
Target:  5'- uCCGCUaCGGCaCAUGC----CCUaGCGGGg -3'
miRNA:   3'- -GGCGG-GUCG-GUACGuaauGGA-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 41424 0.66 0.898011
Target:  5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3'
miRNA:   3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 87623 0.66 0.91033
Target:  5'- gCCGCCgCgcagGGCCgAUGCA--GCCgcGUGGGg -3'
miRNA:   3'- -GGCGG-G----UCGG-UACGUaaUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 67494 0.66 0.884793
Target:  5'- gCCGCCCgucGGCCc--CAUUGCCU-CGGa -3'
miRNA:   3'- -GGCGGG---UCGGuacGUAAUGGAcGCCc -5'
24356 3' -56.8 NC_005264.1 + 137824 0.66 0.91033
Target:  5'- gCGCCUcaggagAGgCAUGCAgcGCCUGagccgcaGGGg -3'
miRNA:   3'- gGCGGG------UCgGUACGUaaUGGACg------CCC- -5'
24356 3' -56.8 NC_005264.1 + 101487 0.66 0.898011
Target:  5'- aCGCUuugaCGGCCAUGCGggAgUUGCacGGGg -3'
miRNA:   3'- gGCGG----GUCGGUACGUaaUgGACG--CCC- -5'
24356 3' -56.8 NC_005264.1 + 116839 0.66 0.877857
Target:  5'- -gGCCCAGaacaCuugGCGUacGCUUGCGGGu -3'
miRNA:   3'- ggCGGGUCg---Gua-CGUAa-UGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 1445 0.67 0.863349
Target:  5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3'
miRNA:   3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 65782 0.66 0.91033
Target:  5'- uCCGCCUcacggAGaCCAUGCGcuuaucgACUUGCGcGGc -3'
miRNA:   3'- -GGCGGG-----UC-GGUACGUaa-----UGGACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 58793 0.66 0.903667
Target:  5'- aCCGCCCcccugaGGCCGaaaaaccucuccaUGCAgcuuCUUGCGGc -3'
miRNA:   3'- -GGCGGG------UCGGU-------------ACGUaau-GGACGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.