miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 1445 0.67 0.863349
Target:  5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3'
miRNA:   3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 2387 0.68 0.823646
Target:  5'- gUCGCCCgcaggAGCCcgGCGccgGCCUGCcuaGGa -3'
miRNA:   3'- -GGCGGG-----UCGGuaCGUaa-UGGACGc--CC- -5'
24356 3' -56.8 NC_005264.1 + 3968 0.69 0.761199
Target:  5'- gCCGCgCCGGCCG-GCuUUACCgccaGCaGGGc -3'
miRNA:   3'- -GGCG-GGUCGGUaCGuAAUGGa---CG-CCC- -5'
24356 3' -56.8 NC_005264.1 + 7064 0.68 0.797738
Target:  5'- aCgGCgCCGGCCGgcGCcgUcGCgCUGCGGGg -3'
miRNA:   3'- -GgCG-GGUCGGUa-CGuaA-UG-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 9717 0.69 0.751764
Target:  5'- gCCGCUgAGCCAUugugcccgccGCGgcaaaCUGCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUA----------CGUaaug-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 14039 0.66 0.904284
Target:  5'- gUCGUCCGGaCGUgGCGggGCCggGUGGGa -3'
miRNA:   3'- -GGCGGGUCgGUA-CGUaaUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 16476 0.71 0.653242
Target:  5'- aCGaCgCAGCC--GCGgugGCCUGCGGGg -3'
miRNA:   3'- gGC-GgGUCGGuaCGUaa-UGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 17113 0.67 0.855789
Target:  5'- cCCGCagcagCAGCUAUGCu---UCUGCGGu -3'
miRNA:   3'- -GGCGg----GUCGGUACGuaauGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 17775 0.7 0.700265
Target:  5'- gCUGCCCGGCCcgGCuUcuagagcgccaaggUACCUgGCGGu -3'
miRNA:   3'- -GGCGGGUCGGuaCGuA--------------AUGGA-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 18491 0.66 0.91033
Target:  5'- uCCGCCCAGUagauUcgGCGaaaacgccUUGCCgauCGGGg -3'
miRNA:   3'- -GGCGGGUCG----GuaCGU--------AAUGGac-GCCC- -5'
24356 3' -56.8 NC_005264.1 + 22482 0.72 0.572781
Target:  5'- uUCGCUCGGCCuaucGCAUca-CUGCGGGc -3'
miRNA:   3'- -GGCGGGUCGGua--CGUAaugGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 24515 0.66 0.891513
Target:  5'- gUCGCgCAcgcGCCAUGaccacaacUUGCCUGCGGu -3'
miRNA:   3'- -GGCGgGU---CGGUACgu------AAUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 24634 0.69 0.770522
Target:  5'- aCCGCgCAGCgCAUGCuuaauccccacgGUUcuggccACCUGCGGu -3'
miRNA:   3'- -GGCGgGUCG-GUACG------------UAA------UGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 25605 0.66 0.904899
Target:  5'- gCGCCgGGCCG-GCGUUGCggaacacggcggcgGUGGGg -3'
miRNA:   3'- gGCGGgUCGGUaCGUAAUGga------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 28753 0.66 0.91033
Target:  5'- gCGCCCAGaCGUGCucUAgCUGCGc- -3'
miRNA:   3'- gGCGGGUCgGUACGuaAUgGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 29579 0.78 0.29782
Target:  5'- gCCGCUCGGCC-UGU-UUGCCUGCGGc -3'
miRNA:   3'- -GGCGGGUCGGuACGuAAUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 30431 0.66 0.884793
Target:  5'- -aGCCgCGGCU-UGUAgcucgUGCCUGCGGc -3'
miRNA:   3'- ggCGG-GUCGGuACGUa----AUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 31036 0.69 0.742228
Target:  5'- gCCGCCUAGCgguCGUGCGgcUGCgUUGCGGa -3'
miRNA:   3'- -GGCGGGUCG---GUACGUa-AUG-GACGCCc -5'
24356 3' -56.8 NC_005264.1 + 34916 0.66 0.903667
Target:  5'- cCC-CCCAGCCucuguucgugucaGUGuCGUaAUCUGUGGGc -3'
miRNA:   3'- -GGcGGGUCGG-------------UAC-GUAaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 35743 0.66 0.891513
Target:  5'- gCCGCCCGuGCCcgacUGCG--GCCgcgacGUGGGu -3'
miRNA:   3'- -GGCGGGU-CGGu---ACGUaaUGGa----CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.