miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 161294 0.66 0.891513
Target:  5'- cCCGCCUAuuGCCGgcGCGgucaacGCC-GCGGGg -3'
miRNA:   3'- -GGCGGGU--CGGUa-CGUaa----UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 160451 0.66 0.898011
Target:  5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3'
miRNA:   3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 158562 0.69 0.770522
Target:  5'- aCUGgCCAGCCAUGCAg-GCCgaacagacucgcUGCGcGGc -3'
miRNA:   3'- -GGCgGGUCGGUACGUaaUGG------------ACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 158505 0.68 0.823646
Target:  5'- gCGCUCAGCCGccagggGCAg-GCCUGCGc- -3'
miRNA:   3'- gGCGGGUCGGUa-----CGUaaUGGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 158236 0.67 0.863349
Target:  5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3'
miRNA:   3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 157365 0.68 0.823646
Target:  5'- -gGCCCuGGCCGUGa--UGCUgggcgGCGGGg -3'
miRNA:   3'- ggCGGG-UCGGUACguaAUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 157141 0.66 0.91033
Target:  5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3'
miRNA:   3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 154769 0.66 0.891513
Target:  5'- gCCGCCCGuGCCcgacUGCG--GCCgcgacGUGGGu -3'
miRNA:   3'- -GGCGGGU-CGGu---ACGUaaUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 153942 0.66 0.90854
Target:  5'- cCC-CCCAGCCucuguuucgugucaGUGuCGUaAUCUGUGGGc -3'
miRNA:   3'- -GGcGGGUCGG--------------UAC-GUAaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 150063 0.69 0.742228
Target:  5'- gCCGCCUAGCgguCGUGCGgcUGCgUUGCGGa -3'
miRNA:   3'- -GGCGGGUCG---GUACGUa-AUG-GACGCCc -5'
24356 3' -56.8 NC_005264.1 + 145704 0.67 0.840084
Target:  5'- gCCGCCCccucgacGCCGUaccgcagaaGCAUagcUGCUgcUGCGGGg -3'
miRNA:   3'- -GGCGGGu------CGGUA---------CGUA---AUGG--ACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 140316 1.13 0.001505
Target:  5'- cCCGCCCAGCCAUGCAUUACCUGCGGGg -3'
miRNA:   3'- -GGCGGGUCGGUACGUAAUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 138774 0.71 0.663306
Target:  5'- gCGCCUGGCCGUGCuGUUGgCUGUGu- -3'
miRNA:   3'- gGCGGGUCGGUACG-UAAUgGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 138474 0.67 0.848032
Target:  5'- gCCGCgaagCCGGUCAUGCcagAgCgGCGGGg -3'
miRNA:   3'- -GGCG----GGUCGGUACGuaaUgGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 137824 0.66 0.91033
Target:  5'- gCGCCUcaggagAGgCAUGCAgcGCCUGagccgcaGGGg -3'
miRNA:   3'- gGCGGG------UCgGUACGUaaUGGACg------CCC- -5'
24356 3' -56.8 NC_005264.1 + 128743 0.69 0.751764
Target:  5'- gCCGCUgAGCCAUugugcccgccGCGgcaaaCUGCGGGc -3'
miRNA:   3'- -GGCGGgUCGGUA----------CGUaaug-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 127810 0.67 0.855789
Target:  5'- gUCGCgCgAGCCAUcucccgacaGCGUUGCCUccGCGGcGg -3'
miRNA:   3'- -GGCG-GgUCGGUA---------CGUAAUGGA--CGCC-C- -5'
24356 3' -56.8 NC_005264.1 + 126091 0.68 0.797738
Target:  5'- aCgGCgCCGGCCGgcGCcgUcGCgCUGCGGGg -3'
miRNA:   3'- -GgCG-GGUCGGUa-CGuaA-UG-GACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 122994 0.68 0.80653
Target:  5'- gCCGCgCCGGCCG-GCuUUACCgccaaGCaGGGc -3'
miRNA:   3'- -GGCG-GGUCGGUaCGuAAUGGa----CG-CCC- -5'
24356 3' -56.8 NC_005264.1 + 121414 0.68 0.823646
Target:  5'- gUCGCCCgcaggAGCCcgGCGccgGCCUGCcuaGGa -3'
miRNA:   3'- -GGCGGG-----UCGGuaCGUaa-UGGACGc--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.