miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 38114 0.66 0.91033
Target:  5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3'
miRNA:   3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 38338 0.68 0.823646
Target:  5'- -gGCCCuGGCCGUGa--UGCUgggcgGCGGGg -3'
miRNA:   3'- ggCGGG-UCGGUACguaAUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 39209 0.67 0.863349
Target:  5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3'
miRNA:   3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 39478 0.68 0.823646
Target:  5'- gCGCUCAGCCGccagggGCAg-GCCUGCGc- -3'
miRNA:   3'- gGCGGGUCGGUa-----CGUaaUGGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 41424 0.66 0.898011
Target:  5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3'
miRNA:   3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 42267 0.66 0.891513
Target:  5'- cCCGCCUAuuGCCGgcGCGgucaacGCC-GCGGGg -3'
miRNA:   3'- -GGCGGGU--CGGUa-CGUaa----UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 43553 0.66 0.891513
Target:  5'- gCUGCCCAGCCAccgcgaGCA--ACCgGCGa- -3'
miRNA:   3'- -GGCGGGUCGGUa-----CGUaaUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 46431 0.66 0.884109
Target:  5'- gCCGCCCugcgcucgacgucGGCCugcggcuuuUGCGcggcgcucuUUGCCUGUGGa -3'
miRNA:   3'- -GGCGGG-------------UCGGu--------ACGU---------AAUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 46563 0.69 0.75366
Target:  5'- gCCGCCCGcGCCAcggcuuccaagucgcGCGUgcggaggcucugucCCUGCGGGg -3'
miRNA:   3'- -GGCGGGU-CGGUa--------------CGUAau------------GGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 52946 0.69 0.732598
Target:  5'- gCGCCC-GCgGcGCAUUGCgCcGCGGGg -3'
miRNA:   3'- gGCGGGuCGgUaCGUAAUG-GaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 53228 0.76 0.380028
Target:  5'- cCCGCCCAcGCCAuuUGCuuuccgUGCCccGCGGGc -3'
miRNA:   3'- -GGCGGGU-CGGU--ACGua----AUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 58793 0.66 0.903667
Target:  5'- aCCGCCCcccugaGGCCGaaaaaccucuccaUGCAgcuuCUUGCGGc -3'
miRNA:   3'- -GGCGGG------UCGGU-------------ACGUaau-GGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 59864 0.69 0.750815
Target:  5'- gCCGCCaCGGUCAUGCuagcUGCUUacggucacgcaucGCGGGc -3'
miRNA:   3'- -GGCGG-GUCGGUACGua--AUGGA-------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 59970 0.68 0.823646
Target:  5'- gCCGCUCAGCCAcgcgGCGgugGCC-GCGa- -3'
miRNA:   3'- -GGCGGGUCGGUa---CGUaa-UGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 64404 0.7 0.722883
Target:  5'- -aGCCCGGCCAagGCcgacGCC-GCGGGc -3'
miRNA:   3'- ggCGGGUCGGUa-CGuaa-UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 65420 0.67 0.838473
Target:  5'- gCGCCCuggucaaggauuguGUCGagcacguuuugacucUGCAcgGCCUGCGGGc -3'
miRNA:   3'- gGCGGGu-------------CGGU---------------ACGUaaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 65782 0.66 0.91033
Target:  5'- uCCGCCUcacggAGaCCAUGCGcuuaucgACUUGCGcGGc -3'
miRNA:   3'- -GGCGGG-----UC-GGUACGUaa-----UGGACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 66472 0.7 0.683352
Target:  5'- aCCGCCgCGGCCAgacuCAaUGCUUgGCGGGc -3'
miRNA:   3'- -GGCGG-GUCGGUac--GUaAUGGA-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 67494 0.66 0.884793
Target:  5'- gCCGCCCgucGGCCc--CAUUGCCU-CGGa -3'
miRNA:   3'- -GGCGGG---UCGGuacGUAAUGGAcGCCc -5'
24356 3' -56.8 NC_005264.1 + 67519 0.69 0.732598
Target:  5'- gCGCCCGGCggcggcaaucucCAUGCGcUGCCguaugGCGGc -3'
miRNA:   3'- gGCGGGUCG------------GUACGUaAUGGa----CGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.