miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 43553 0.66 0.891513
Target:  5'- gCUGCCCAGCCAccgcgaGCA--ACCgGCGa- -3'
miRNA:   3'- -GGCGGGUCGGUa-----CGUaaUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 85020 0.66 0.891513
Target:  5'- gUCGCa-GGCCAUGU---GCC-GCGGGg -3'
miRNA:   3'- -GGCGggUCGGUACGuaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 154769 0.66 0.891513
Target:  5'- gCCGCCCGuGCCcgacUGCG--GCCgcgacGUGGGu -3'
miRNA:   3'- -GGCGGGU-CGGu---ACGUaaUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 161294 0.66 0.891513
Target:  5'- cCCGCCUAuuGCCGgcGCGgucaacGCC-GCGGGg -3'
miRNA:   3'- -GGCGGGU--CGGUa-CGUaa----UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 35743 0.66 0.891513
Target:  5'- gCCGCCCGuGCCcgacUGCG--GCCgcgacGUGGGu -3'
miRNA:   3'- -GGCGGGU-CGGu---ACGUaaUGGa----CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 42267 0.66 0.891513
Target:  5'- cCCGCCUAuuGCCGgcGCGgucaacGCC-GCGGGg -3'
miRNA:   3'- -GGCGGGU--CGGUa-CGUaa----UGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 82798 0.66 0.884793
Target:  5'- uCCGCUaCGGCaCAUGC----CCUaGCGGGg -3'
miRNA:   3'- -GGCGG-GUCG-GUACGuaauGGA-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 30431 0.66 0.884793
Target:  5'- -aGCCgCGGCU-UGUAgcucgUGCCUGCGGc -3'
miRNA:   3'- ggCGG-GUCGGuACGUa----AUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 67494 0.66 0.884793
Target:  5'- gCCGCCCgucGGCCc--CAUUGCCU-CGGa -3'
miRNA:   3'- -GGCGGG---UCGGuacGUAAUGGAcGCCc -5'
24356 3' -56.8 NC_005264.1 + 46431 0.66 0.884109
Target:  5'- gCCGCCCugcgcucgacgucGGCCugcggcuuuUGCGcggcgcucuUUGCCUGUGGa -3'
miRNA:   3'- -GGCGGG-------------UCGGu--------ACGU---------AAUGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 116839 0.66 0.877857
Target:  5'- -gGCCCAGaacaCuugGCGUacGCUUGCGGGu -3'
miRNA:   3'- ggCGGGUCg---Gua-CGUAa-UGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 79397 0.67 0.863349
Target:  5'- aCCGCCgCGGgCGUgGCGagGCCgcgGCGGa -3'
miRNA:   3'- -GGCGG-GUCgGUA-CGUaaUGGa--CGCCc -5'
24356 3' -56.8 NC_005264.1 + 39209 0.67 0.863349
Target:  5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3'
miRNA:   3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 120472 0.67 0.863349
Target:  5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3'
miRNA:   3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 1445 0.67 0.863349
Target:  5'- uCCGCgggagCCAGCaCcgGcCAUcGCCgGCGGGg -3'
miRNA:   3'- -GGCG-----GGUCG-GuaC-GUAaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 158236 0.67 0.863349
Target:  5'- gCGCCUAcGCCGccGCGgcGCUgGCGGGg -3'
miRNA:   3'- gGCGGGU-CGGUa-CGUaaUGGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 17113 0.67 0.855789
Target:  5'- cCCGCagcagCAGCUAUGCu---UCUGCGGu -3'
miRNA:   3'- -GGCGg----GUCGGUACGuaauGGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 127810 0.67 0.855789
Target:  5'- gUCGCgCgAGCCAUcucccgacaGCGUUGCCUccGCGGcGg -3'
miRNA:   3'- -GGCG-GgUCGGUA---------CGUAAUGGA--CGCC-C- -5'
24356 3' -56.8 NC_005264.1 + 138474 0.67 0.848032
Target:  5'- gCCGCgaagCCGGUCAUGCcagAgCgGCGGGg -3'
miRNA:   3'- -GGCG----GGUCGGUACGuaaUgGaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 109913 0.67 0.848032
Target:  5'- -gGCgCGGCCAUGCAaUGCCccucgaagugGCGGu -3'
miRNA:   3'- ggCGgGUCGGUACGUaAUGGa---------CGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.