miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 3' -60.9 NC_005264.1 + 139801 1.1 0.001195
Target:  5'- cGAACGCGUGCCGUCGGCCGUCGCGGGa -3'
miRNA:   3'- -CUUGCGCACGGCAGCCGGCAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 48686 0.73 0.371001
Target:  5'- uGGGCGCGagucUGCuCGUcgCGGUCGcUCGCGGGa -3'
miRNA:   3'- -CUUGCGC----ACG-GCA--GCCGGC-AGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 94505 0.73 0.385809
Target:  5'- --uCGCGUuagugcaGCCGUCGGCCa-CGUGGGa -3'
miRNA:   3'- cuuGCGCA-------CGGCAGCCGGcaGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 108143 0.73 0.386599
Target:  5'- gGAuCGgGggGCCGUCGaGCC-UCGCGGGg -3'
miRNA:   3'- -CUuGCgCa-CGGCAGC-CGGcAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 35474 0.72 0.394559
Target:  5'- uGACGCGagagUGCCG-CGGCCGaUCGCGa- -3'
miRNA:   3'- cUUGCGC----ACGGCaGCCGGC-AGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 50165 0.72 0.419062
Target:  5'- cGAGgGCGUGCCGcaauacuccgUGGCCGUCaucuaCGGGg -3'
miRNA:   3'- -CUUgCGCACGGCa---------GCCGGCAGc----GCCC- -5'
24357 3' -60.9 NC_005264.1 + 132223 0.72 0.435902
Target:  5'- -cGCGCGgauCCGUCGccgccGCCGUCGcCGGGc -3'
miRNA:   3'- cuUGCGCac-GGCAGC-----CGGCAGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 13196 0.72 0.435902
Target:  5'- -cGCGCGgauCCGUCGccgccGCCGUCGcCGGGc -3'
miRNA:   3'- cuUGCGCac-GGCAGC-----CGGCAGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 90976 0.71 0.444467
Target:  5'- --cCGCGUGCCGUCGcggaacaccGCCGcCGCGa- -3'
miRNA:   3'- cuuGCGCACGGCAGC---------CGGCaGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 14265 0.71 0.453125
Target:  5'- uAGCGCGUuCC-UCgGGCaCGUCGCGGGc -3'
miRNA:   3'- cUUGCGCAcGGcAG-CCG-GCAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 88096 0.71 0.461875
Target:  5'- -uGCGCGUcggGCacagCGUCGGCCGgCGCGGu -3'
miRNA:   3'- cuUGCGCA---CG----GCAGCCGGCaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 66613 0.71 0.461875
Target:  5'- --cCGCGuUGCCGgc-GCCGUCGCGGc -3'
miRNA:   3'- cuuGCGC-ACGGCagcCGGCAGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 42071 0.71 0.461875
Target:  5'- cGGCGCGUGgCGUCaGCUG-CGcCGGGa -3'
miRNA:   3'- cUUGCGCACgGCAGcCGGCaGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 141594 0.71 0.461875
Target:  5'- cGGCGCGcacacucgaGCCGUCGucaacgcggaaaGCCGUCGCGGc -3'
miRNA:   3'- cUUGCGCa--------CGGCAGC------------CGGCAGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 6610 0.71 0.48864
Target:  5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3'
miRNA:   3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 125637 0.71 0.48864
Target:  5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3'
miRNA:   3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 103127 0.7 0.516112
Target:  5'- cGGCGCGguaGCCGcCGGCgCGgcgCGCGGc -3'
miRNA:   3'- cUUGCGCa--CGGCaGCCG-GCa--GCGCCc -5'
24357 3' -60.9 NC_005264.1 + 142966 0.7 0.533828
Target:  5'- uAGCGCG-GCCG-CGGCgGUCucucgggcaugagGCGGGc -3'
miRNA:   3'- cUUGCGCaCGGCaGCCGgCAG-------------CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 125236 0.69 0.552705
Target:  5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3'
miRNA:   3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 6209 0.69 0.552705
Target:  5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3'
miRNA:   3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.