miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 3' -60.9 NC_005264.1 + 56415 0.67 0.679074
Target:  5'- cGAGCGCGgcGCCGUCGaGCUucggGUCuuuGCGGu -3'
miRNA:   3'- -CUUGCGCa-CGGCAGC-CGG----CAG---CGCCc -5'
24357 3' -60.9 NC_005264.1 + 24200 0.69 0.601625
Target:  5'- uGGCGCgGUGCCGgUGGCCGaagccagcgCGcCGGGa -3'
miRNA:   3'- cUUGCG-CACGGCaGCCGGCa--------GC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 92988 0.69 0.601625
Target:  5'- -cACGCGccgcaGCaCG-CGGCCGUaGCGGGg -3'
miRNA:   3'- cuUGCGCa----CG-GCaGCCGGCAgCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 19417 0.68 0.620996
Target:  5'- gGGAgGCGaggcGCCGggugUGGCCGcggggCGCGGGu -3'
miRNA:   3'- -CUUgCGCa---CGGCa---GCCGGCa----GCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 95367 0.68 0.620996
Target:  5'- cGGCGCGUGCCGcCaaacuGCCaggCGUGGGa -3'
miRNA:   3'- cUUGCGCACGGCaGc----CGGca-GCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 147021 0.68 0.620996
Target:  5'- cGAGCGCGaacGgCGUCGuuCGUCGuCGGGc -3'
miRNA:   3'- -CUUGCGCa--CgGCAGCcgGCAGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 124292 0.68 0.630697
Target:  5'- gGGAgGCGaGUCG-CGGCCGgacgGCGGGg -3'
miRNA:   3'- -CUUgCGCaCGGCaGCCGGCag--CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 98081 0.68 0.640398
Target:  5'- cAugGUGUGCCc-CGGCCGcCcCGGGg -3'
miRNA:   3'- cUugCGCACGGcaGCCGGCaGcGCCC- -5'
24357 3' -60.9 NC_005264.1 + 106093 0.67 0.679074
Target:  5'- --gUGCGUGCCaaucUCGGCCucCGCGGa -3'
miRNA:   3'- cuuGCGCACGGc---AGCCGGcaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 65742 0.69 0.563173
Target:  5'- cGAUGUGUgguccGCCGUCGGCCGgCGCa-- -3'
miRNA:   3'- cUUGCGCA-----CGGCAGCCGGCaGCGccc -5'
24357 3' -60.9 NC_005264.1 + 54590 0.69 0.563173
Target:  5'- uGAGCGUGgucaacGCCGgccUCGGCgCGU-GCGGGa -3'
miRNA:   3'- -CUUGCGCa-----CGGC---AGCCG-GCAgCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 125236 0.69 0.552705
Target:  5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3'
miRNA:   3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 50165 0.72 0.419062
Target:  5'- cGAGgGCGUGCCGcaauacuccgUGGCCGUCaucuaCGGGg -3'
miRNA:   3'- -CUUgCGCACGGCa---------GCCGGCAGc----GCCC- -5'
24357 3' -60.9 NC_005264.1 + 132223 0.72 0.435902
Target:  5'- -cGCGCGgauCCGUCGccgccGCCGUCGcCGGGc -3'
miRNA:   3'- cuUGCGCac-GGCAGC-----CGGCAGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 14265 0.71 0.453125
Target:  5'- uAGCGCGUuCC-UCgGGCaCGUCGCGGGc -3'
miRNA:   3'- cUUGCGCAcGGcAG-CCG-GCAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 66613 0.71 0.461875
Target:  5'- --cCGCGuUGCCGgc-GCCGUCGCGGc -3'
miRNA:   3'- cuuGCGC-ACGGCagcCGGCAGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 88096 0.71 0.461875
Target:  5'- -uGCGCGUcggGCacagCGUCGGCCGgCGCGGu -3'
miRNA:   3'- cuUGCGCA---CG----GCAGCCGGCaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 42071 0.71 0.461875
Target:  5'- cGGCGCGUGgCGUCaGCUG-CGcCGGGa -3'
miRNA:   3'- cUUGCGCACgGCAGcCGGCaGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 141594 0.71 0.461875
Target:  5'- cGGCGCGcacacucgaGCCGUCGucaacgcggaaaGCCGUCGCGGc -3'
miRNA:   3'- cUUGCGCa--------CGGCAGC------------CGGCAGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 125637 0.71 0.48864
Target:  5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3'
miRNA:   3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.