miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 3' -60.9 NC_005264.1 + 5265 0.68 0.630697
Target:  5'- gGGAgGCGaGUCG-CGGCCGgacgGCGGGg -3'
miRNA:   3'- -CUUgCGCaCGGCaGCCGGCag--CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 6209 0.69 0.552705
Target:  5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3'
miRNA:   3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 6261 0.66 0.763312
Target:  5'- --uCGCG-GUCGUCGccGCCGUCGgGaGGc -3'
miRNA:   3'- cuuGCGCaCGGCAGC--CGGCAGCgC-CC- -5'
24357 3' -60.9 NC_005264.1 + 6610 0.71 0.48864
Target:  5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3'
miRNA:   3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 13196 0.72 0.435902
Target:  5'- -cGCGCGgauCCGUCGccgccGCCGUCGcCGGGc -3'
miRNA:   3'- cuUGCGCac-GGCAGC-----CGGCAGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 14265 0.71 0.453125
Target:  5'- uAGCGCGUuCC-UCgGGCaCGUCGCGGGc -3'
miRNA:   3'- cUUGCGCAcGGcAG-CCG-GCAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 19417 0.68 0.620996
Target:  5'- gGGAgGCGaggcGCCGggugUGGCCGcggggCGCGGGu -3'
miRNA:   3'- -CUUgCGCa---CGGCa---GCCGGCa----GCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 20147 0.66 0.745123
Target:  5'- cGAugGCGcGCCGcCGGCgcccaaGaUCGCGGc -3'
miRNA:   3'- -CUugCGCaCGGCaGCCGg-----C-AGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 24200 0.69 0.601625
Target:  5'- uGGCGCgGUGCCGgUGGCCGaagccagcgCGcCGGGa -3'
miRNA:   3'- cUUGCG-CACGGCaGCCGGCa--------GC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 34510 0.67 0.687716
Target:  5'- cGACGCGcaaguaagcaggaUGCgGUUGGgCGUUgGCGGGg -3'
miRNA:   3'- cUUGCGC-------------ACGgCAGCCgGCAG-CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 34987 0.67 0.71342
Target:  5'- --uCGCGcGCCGgguucuagaccgcCGGCCGcCGCGGa -3'
miRNA:   3'- cuuGCGCaCGGCa------------GCCGGCaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 35474 0.72 0.394559
Target:  5'- uGACGCGagagUGCCG-CGGCCGaUCGCGa- -3'
miRNA:   3'- cUUGCGC----ACGGCaGCCGGC-AGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 39204 0.66 0.763312
Target:  5'- aGAACGCGccuacGCCGccgCGGCgcUgGCGGGg -3'
miRNA:   3'- -CUUGCGCa----CGGCa--GCCGgcAgCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 42071 0.71 0.461875
Target:  5'- cGGCGCGUGgCGUCaGCUG-CGcCGGGa -3'
miRNA:   3'- cUUGCGCACgGCAGcCGGCaGC-GCCC- -5'
24357 3' -60.9 NC_005264.1 + 43882 0.69 0.599692
Target:  5'- cGAGCGCGgcaaagggggcGCCGgagacgauagcgCGGCCGUCGCcucgacgucgaGGGc -3'
miRNA:   3'- -CUUGCGCa----------CGGCa-----------GCCGGCAGCG-----------CCC- -5'
24357 3' -60.9 NC_005264.1 + 47205 0.67 0.688675
Target:  5'- uGAGCGgG-GCCa-CGGCCGUCGauGGc -3'
miRNA:   3'- -CUUGCgCaCGGcaGCCGGCAGCgcCC- -5'
24357 3' -60.9 NC_005264.1 + 48686 0.73 0.371001
Target:  5'- uGGGCGCGagucUGCuCGUcgCGGUCGcUCGCGGGa -3'
miRNA:   3'- -CUUGCGC----ACG-GCA--GCCGGC-AGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 49793 0.68 0.630697
Target:  5'- --uCGCGUaagaucGCCG-CGGCCcaGUCGCGGc -3'
miRNA:   3'- cuuGCGCA------CGGCaGCCGG--CAGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 50165 0.72 0.419062
Target:  5'- cGAGgGCGUGCCGcaauacuccgUGGCCGUCaucuaCGGGg -3'
miRNA:   3'- -CUUgCGCACGGCa---------GCCGGCAGc----GCCC- -5'
24357 3' -60.9 NC_005264.1 + 50594 0.68 0.620027
Target:  5'- uGAGCGCaaauuucuUGCCGUCGGCgGUaccguacucgaacCGCGGc -3'
miRNA:   3'- -CUUGCGc-------ACGGCAGCCGgCA-------------GCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.