miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 53308 0.67 0.966768
Target:  5'- --cGGGAAGUCugcccagGGGCugcuuggccaGCAGGGGCAGCc -3'
miRNA:   3'- agaCCCUUCGG-------UCCG----------UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 43583 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 33933 0.75 0.61623
Target:  5'- gCUGGGAAgGCCGuGGCGCGccGGGACcGCg -3'
miRNA:   3'- aGACCCUU-CGGU-CCGUGU--UCUUGuUG- -5'
24359 3' -52 NC_005264.1 + 89165 0.7 0.883571
Target:  5'- aCUGGcAGGCCAGGCAagUAGGGucgucccgGCGGCa -3'
miRNA:   3'- aGACCcUUCGGUCCGU--GUUCU--------UGUUG- -5'
24359 3' -52 NC_005264.1 + 103698 0.67 0.963734
Target:  5'- --gGGGAAGUUgaGGGC-CAguGGAGCGGCg -3'
miRNA:   3'- agaCCCUUCGG--UCCGuGU--UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 68192 0.66 0.982755
Target:  5'- gUUUGGGcuuGGUUAGGUACAGGuauauccuCAGCg -3'
miRNA:   3'- -AGACCCu--UCGGUCCGUGUUCuu------GUUG- -5'
24359 3' -52 NC_005264.1 + 153792 0.7 0.890683
Target:  5'- aUCUGGcGGugacuuuccccaAGCCAGGCGCGaacgcgucGGGACuAACg -3'
miRNA:   3'- -AGACC-CU------------UCGGUCCGUGU--------UCUUG-UUG- -5'
24359 3' -52 NC_005264.1 + 88233 0.66 0.982755
Target:  5'- --gGGGAacguggGGUCAGGCGCGGGGuCAu- -3'
miRNA:   3'- agaCCCU------UCGGUCCGUGUUCUuGUug -5'
24359 3' -52 NC_005264.1 + 56918 0.66 0.982755
Target:  5'- -aUGGGGcggcguacguGCguGGCGCAcGGGGCGACg -3'
miRNA:   3'- agACCCUu---------CGguCCGUGU-UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 132392 0.67 0.970227
Target:  5'- aCUGGuGAacguGGCCgcAGGCACGAGcuACAAg -3'
miRNA:   3'- aGACC-CU----UCGG--UCCGUGUUCu-UGUUg -5'
24359 3' -52 NC_005264.1 + 41368 0.67 0.963734
Target:  5'- cUCcGGGAAGaaCGGGCACAcGGACGu- -3'
miRNA:   3'- -AGaCCCUUCg-GUCCGUGUuCUUGUug -5'
24359 3' -52 NC_005264.1 + 138578 1.1 0.00512
Target:  5'- cUCUGGGAAGCCAGGCACAAGAACAACu -3'
miRNA:   3'- -AGACCCUUCGGUCCGUGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 41857 0.68 0.947917
Target:  5'- -aUGGG-AGCuCGGGgGgGGGGGCAACg -3'
miRNA:   3'- agACCCuUCG-GUCCgUgUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 101832 0.7 0.876218
Target:  5'- cCUGGccGAAGCCgAGGCA-GAGAACGAg -3'
miRNA:   3'- aGACC--CUUCGG-UCCGUgUUCUUGUUg -5'
24359 3' -52 NC_005264.1 + 54719 0.71 0.836057
Target:  5'- -gUGGGAAGCguGGCGCucacguGGACGGa -3'
miRNA:   3'- agACCCUUCGguCCGUGuu----CUUGUUg -5'
24359 3' -52 NC_005264.1 + 29227 0.76 0.595032
Target:  5'- -aUGGGGAGCCAGcGguCGAGGagcACAGCg -3'
miRNA:   3'- agACCCUUCGGUC-CguGUUCU---UGUUG- -5'
24359 3' -52 NC_005264.1 + 64762 0.67 0.970227
Target:  5'- --gGGGcGGCCgGGGCACAccauGCAACa -3'
miRNA:   3'- agaCCCuUCGG-UCCGUGUucu-UGUUG- -5'
24359 3' -52 NC_005264.1 + 38353 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 8765 0.66 0.975843
Target:  5'- cUCUGGGGAGaggcgaacggCGGGCGuCGgccAGGACGGCc -3'
miRNA:   3'- -AGACCCUUCg---------GUCCGU-GU---UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 48338 0.66 0.978341
Target:  5'- cCUGGGGAGUUGGcGCACGccauGGCGGCc -3'
miRNA:   3'- aGACCCUUCGGUC-CGUGUuc--UUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.