miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 5' -56.9 NC_005264.1 + 60992 0.66 0.883429
Target:  5'- -gACUAUCgCGGCcuCGUUcucugccucGGCUUCGGc -3'
miRNA:   3'- aaUGAUAGgGCCGc-GCGA---------CCGAAGCC- -5'
24359 5' -56.9 NC_005264.1 + 53274 0.66 0.869124
Target:  5'- cUUGCUGUCCCgcGGCGCcGCaguuUGGUUgccaGGa -3'
miRNA:   3'- -AAUGAUAGGG--CCGCG-CG----ACCGAag--CC- -5'
24359 5' -56.9 NC_005264.1 + 106452 0.67 0.812748
Target:  5'- -gGCUucggaGGCGCGCUGG-UUCGGa -3'
miRNA:   3'- aaUGAuagggCCGCGCGACCgAAGCC- -5'
24359 5' -56.9 NC_005264.1 + 62061 0.67 0.812748
Target:  5'- -----uUUgCGGCGCGCaUGGCUUgGGc -3'
miRNA:   3'- aaugauAGgGCCGCGCG-ACCGAAgCC- -5'
24359 5' -56.9 NC_005264.1 + 61420 0.68 0.803985
Target:  5'- -aGCgacaaCCGGCGCGCUGGUgguaUUCa- -3'
miRNA:   3'- aaUGauag-GGCCGCGCGACCG----AAGcc -5'
24359 5' -56.9 NC_005264.1 + 22314 0.68 0.795067
Target:  5'- -aGCUGUagUCUGGCGCGCggGGCaaUGGg -3'
miRNA:   3'- aaUGAUA--GGGCCGCGCGa-CCGaaGCC- -5'
24359 5' -56.9 NC_005264.1 + 6901 0.68 0.786004
Target:  5'- -cGCaGUCCCaGCGCGC-GGCUUuccgUGGg -3'
miRNA:   3'- aaUGaUAGGGcCGCGCGaCCGAA----GCC- -5'
24359 5' -56.9 NC_005264.1 + 120763 0.68 0.775877
Target:  5'- ---aUAUCCCGGCGCaGCUGacgccacGCgccgCGGg -3'
miRNA:   3'- aaugAUAGGGCCGCG-CGAC-------CGaa--GCC- -5'
24359 5' -56.9 NC_005264.1 + 126260 0.68 0.767476
Target:  5'- aUACcAUCCUgGGCGUGUUGGUccgCGGa -3'
miRNA:   3'- aAUGaUAGGG-CCGCGCGACCGaa-GCC- -5'
24359 5' -56.9 NC_005264.1 + 67748 0.68 0.758029
Target:  5'- -cGCgUAUCUCGGCGCaggucgcaguuGCgUGGCUUgGGg -3'
miRNA:   3'- aaUG-AUAGGGCCGCG-----------CG-ACCGAAgCC- -5'
24359 5' -56.9 NC_005264.1 + 58205 0.69 0.748471
Target:  5'- uUUAgUGUucCCCGcGCGCGCUGGUUg-GGa -3'
miRNA:   3'- -AAUgAUA--GGGC-CGCGCGACCGAagCC- -5'
24359 5' -56.9 NC_005264.1 + 64848 0.69 0.738812
Target:  5'- gUACUGgaucCCCGGUGCGCgGGCg---- -3'
miRNA:   3'- aAUGAUa---GGGCCGCGCGaCCGaagcc -5'
24359 5' -56.9 NC_005264.1 + 109341 0.7 0.689319
Target:  5'- -cACUAccUCCCGGCGCauggGGCUUCu- -3'
miRNA:   3'- aaUGAU--AGGGCCGCGcga-CCGAAGcc -5'
24359 5' -56.9 NC_005264.1 + 54912 0.71 0.638644
Target:  5'- -cGCgaagGUCgCGGCGCuGCUGGCgaaCGGc -3'
miRNA:   3'- aaUGa---UAGgGCCGCG-CGACCGaa-GCC- -5'
24359 5' -56.9 NC_005264.1 + 59716 0.71 0.59796
Target:  5'- --gUUAUCuCCGGCGCGCaUGGCU-CGu -3'
miRNA:   3'- aauGAUAG-GGCCGCGCG-ACCGAaGCc -5'
24359 5' -56.9 NC_005264.1 + 117426 0.72 0.577738
Target:  5'- -gGCUGUCgCGGCGCGCagGGCgcCGc -3'
miRNA:   3'- aaUGAUAGgGCCGCGCGa-CCGaaGCc -5'
24359 5' -56.9 NC_005264.1 + 128898 0.72 0.577738
Target:  5'- -gGCgcgGUCCCGGCGCGCcacGGcCUUCc- -3'
miRNA:   3'- aaUGa--UAGGGCCGCGCGa--CC-GAAGcc -5'
24359 5' -56.9 NC_005264.1 + 9872 0.72 0.577738
Target:  5'- -gGCgcgGUCCCGGCGCGCcacGGcCUUCc- -3'
miRNA:   3'- aaUGa--UAGGGCCGCGCGa--CC-GAAGcc -5'
24359 5' -56.9 NC_005264.1 + 36085 0.72 0.57673
Target:  5'- -cGCUGUCCCucucuucGGCGCgGCUGGCagaUGGg -3'
miRNA:   3'- aaUGAUAGGG-------CCGCG-CGACCGaa-GCC- -5'
24359 5' -56.9 NC_005264.1 + 34127 0.72 0.547707
Target:  5'- -cGCUG-CCUcuggugacgGGCGCGUaGGCUUCGGg -3'
miRNA:   3'- aaUGAUaGGG---------CCGCGCGaCCGAAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.