Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24360 | 3' | -51.4 | NC_005264.1 | + | 157647 | 0.68 | 0.963922 |
Target: 5'- uCGCGGCUuc-CGAAGuuucggccGCGAgGGCCUCc -3' miRNA: 3'- -GCGCUGAuauGCUUCu-------CGCU-UCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 4886 | 0.68 | 0.967238 |
Target: 5'- aGCGACac-GCGGAGuuCGAGGCCa- -3' miRNA: 3'- gCGCUGauaUGCUUCucGCUUCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 29124 | 0.68 | 0.967238 |
Target: 5'- cCGaGGCUGUACcuGAGGAGCGcguGGCCg- -3' miRNA: 3'- -GCgCUGAUAUG--CUUCUCGCu--UCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 147153 | 0.68 | 0.967238 |
Target: 5'- gGCGuuCUGUGCGAGGAGCauuuuGggGCa-- -3' miRNA: 3'- gCGCu-GAUAUGCUUCUCG-----CuuCGgag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 74253 | 0.68 | 0.967238 |
Target: 5'- gCGCuccaGACacgGCGGuAGAgGCGggGCCUCa -3' miRNA: 3'- -GCG----CUGauaUGCU-UCU-CGCuuCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 14535 | 0.68 | 0.967238 |
Target: 5'- aCGCGAUgacucUGCGAAGcGUGGAGCUg- -3' miRNA: 3'- -GCGCUGau---AUGCUUCuCGCUUCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 154693 | 0.68 | 0.970333 |
Target: 5'- aGCGGCgcagAUACcgcugucAAGAGCGAGGCUa- -3' miRNA: 3'- gCGCUGa---UAUGc------UUCUCGCUUCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 54342 | 0.68 | 0.970333 |
Target: 5'- gCGCGGCguuUAUGgcGAGCcuuaGAAGCgUCg -3' miRNA: 3'- -GCGCUGau-AUGCuuCUCG----CUUCGgAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 158372 | 0.68 | 0.97151 |
Target: 5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3' miRNA: 3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 39345 | 0.68 | 0.97151 |
Target: 5'- gCGCGACUGUuucccgcccagaaucGCGcAGccaGAGGCCUCa -3' miRNA: 3'- -GCGCUGAUA---------------UGCuUCucgCUUCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 152609 | 0.68 | 0.973213 |
Target: 5'- aCGCGcccGCUAUugagccCGAGGccAGCGAGGCCg- -3' miRNA: 3'- -GCGC---UGAUAu-----GCUUC--UCGCUUCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 129604 | 0.68 | 0.973213 |
Target: 5'- uGCGGC---GCGgcG-GCGAAGCUUCu -3' miRNA: 3'- gCGCUGauaUGCuuCuCGCUUCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 13959 | 0.68 | 0.973213 |
Target: 5'- aCGCGGCg--ACGAGGAgacgagcgagacGCGggGUCg- -3' miRNA: 3'- -GCGCUGauaUGCUUCU------------CGCuuCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 55259 | 0.68 | 0.975885 |
Target: 5'- uGCGACcgccACGAAGAGCuGggGCg-- -3' miRNA: 3'- gCGCUGaua-UGCUUCUCG-CuuCGgag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 115581 | 0.68 | 0.975885 |
Target: 5'- -cUGACUAU-CGAuccggaGGAGUGggGCCUg -3' miRNA: 3'- gcGCUGAUAuGCU------UCUCGCuuCGGAg -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 156520 | 0.68 | 0.975885 |
Target: 5'- uGCGugU--ACGccacGCGAAGCCUCg -3' miRNA: 3'- gCGCugAuaUGCuucuCGCUUCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 31664 | 0.67 | 0.978356 |
Target: 5'- aCGCGaACUGcGCGAGGcagggcucucGGCGggGCUg- -3' miRNA: 3'- -GCGC-UGAUaUGCUUC----------UCGCuuCGGag -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 37358 | 0.67 | 0.978356 |
Target: 5'- cCGCG-CUcgAaaAAGAGCGA-GCCUCc -3' miRNA: 3'- -GCGCuGAuaUgcUUCUCGCUuCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 83005 | 0.67 | 0.97929 |
Target: 5'- gGCGGguuCUGUugGAGGGgcauguuucgucgccGCaGggGCCUCg -3' miRNA: 3'- gCGCU---GAUAugCUUCU---------------CG-CuuCGGAG- -5' |
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24360 | 3' | -51.4 | NC_005264.1 | + | 97527 | 0.67 | 0.980635 |
Target: 5'- cCGCGGCUGUgGCGuGGcAGCGGgcaagAGCCa- -3' miRNA: 3'- -GCGCUGAUA-UGCuUC-UCGCU-----UCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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