miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24361 5' -58.4 NC_005264.1 + 85069 0.69 0.655938
Target:  5'- gUCUCUGCGGCCGcgucgucagauucGGaUACGgCGCCGUa -3'
miRNA:   3'- gAGAGGCGCUGGC-------------UC-AUGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 48854 0.69 0.676766
Target:  5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3'
miRNA:   3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5'
24361 5' -58.4 NC_005264.1 + 113032 0.68 0.725601
Target:  5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3'
miRNA:   3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 81391 0.68 0.725601
Target:  5'- -aCUgCCGaGAUgcaugCGGGUGCGCGCCGCUu -3'
miRNA:   3'- gaGA-GGCgCUG-----GCUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 104800 0.68 0.735173
Target:  5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3'
miRNA:   3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 128564 0.68 0.74466
Target:  5'- aUUUCCGCGGCgGAGcgcagcACGCggauuACCGCg -3'
miRNA:   3'- gAGAGGCGCUGgCUCa-----UGCG-----UGGCGa -5'
24361 5' -58.4 NC_005264.1 + 110859 0.68 0.74466
Target:  5'- cCUCUCgGCGAagaUCGAGcgugaGCGCGCCGaCa -3'
miRNA:   3'- -GAGAGgCGCU---GGCUCa----UGCGUGGC-Ga -5'
24361 5' -58.4 NC_005264.1 + 30391 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 149418 0.68 0.74466
Target:  5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3'
miRNA:   3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5'
24361 5' -58.4 NC_005264.1 + 45329 0.68 0.715953
Target:  5'- -----aGCGACCGcAG-ACGCGCCGCg -3'
miRNA:   3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 132274 0.68 0.715953
Target:  5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3'
miRNA:   3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 87517 0.68 0.725601
Target:  5'- -gCUCCGCGAUCGAugagcCGC-CCGCg -3'
miRNA:   3'- gaGAGGCGCUGGCUcau--GCGuGGCGa -5'
24361 5' -58.4 NC_005264.1 + 16103 0.67 0.763345
Target:  5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3'
miRNA:   3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 37787 0.67 0.807981
Target:  5'- aCUCgaggCgaGCGGCgGAGaagagGCGCGCCGCc -3'
miRNA:   3'- -GAGa---Gg-CGCUGgCUCa----UGCGUGGCGa -5'
24361 5' -58.4 NC_005264.1 + 160073 0.67 0.807981
Target:  5'- -aCUCCccagacgguacgGCG-CCGGGggACGCGCCGUUa -3'
miRNA:   3'- gaGAGG------------CGCuGGCUCa-UGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 79331 0.67 0.763345
Target:  5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3'
miRNA:   3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 152515 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 5232 0.67 0.789636
Target:  5'- uUCuUCCGCGGCCucGGGUACGUuuagagcGCCGg- -3'
miRNA:   3'- gAG-AGGCGCUGG--CUCAUGCG-------UGGCga -5'
24361 5' -58.4 NC_005264.1 + 33488 0.67 0.790524
Target:  5'- cCUCguUCCGCGcuuGCUcAGUGCGCGUCGCUg -3'
miRNA:   3'- -GAG--AGGCGC---UGGcUCAUGCGUGGCGA- -5'
24361 5' -58.4 NC_005264.1 + 124030 0.67 0.763345
Target:  5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3'
miRNA:   3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.