Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24362 | 3' | -54.8 | NC_005264.1 | + | 154947 | 0.68 | 0.900026 |
Target: 5'- aGCgUGGGGgaCGUCGUAcgC-GCGCAGa -3' miRNA: 3'- -CGgACCCC--GUAGCGUuaGaUGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 128309 | 0.68 | 0.900026 |
Target: 5'- uUCUGGGGCAguuuggUGCGGUCgaagGCGUAu- -3' miRNA: 3'- cGGACCCCGUa-----GCGUUAGa---UGCGUcc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 116503 | 0.68 | 0.865125 |
Target: 5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3' miRNA: 3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 12433 | 0.68 | 0.879753 |
Target: 5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3' miRNA: 3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 131460 | 0.68 | 0.879753 |
Target: 5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3' miRNA: 3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 89830 | 0.68 | 0.886737 |
Target: 5'- cGCCgUGGGGCGccaggaGCuuUCUGCGguGu -3' miRNA: 3'- -CGG-ACCCCGUag----CGuuAGAUGCguCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 60434 | 0.68 | 0.893496 |
Target: 5'- ---cGGGGUAuuUUGCGAUC-GCGUAGGa -3' miRNA: 3'- cggaCCCCGU--AGCGUUAGaUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 88227 | 0.68 | 0.893496 |
Target: 5'- cGCCaGGGGgAaCGUggGGUCagGCGCGGGg -3' miRNA: 3'- -CGGaCCCCgUaGCG--UUAGa-UGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 21505 | 0.68 | 0.893496 |
Target: 5'- aCgUGGGcaccgcCGUCGCAGUggGCGCAGGu -3' miRNA: 3'- cGgACCCc-----GUAGCGUUAgaUGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 98514 | 0.68 | 0.879753 |
Target: 5'- cGCCgacggGGGGCcu--CAGUCUugGCAGcGg -3' miRNA: 3'- -CGGa----CCCCGuagcGUUAGAugCGUC-C- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 108893 | 0.67 | 0.906323 |
Target: 5'- cGCCaUGuGGuGCG-CGCGGUCUaACGCGGa -3' miRNA: 3'- -CGG-AC-CC-CGUaGCGUUAGA-UGCGUCc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 96994 | 0.67 | 0.912384 |
Target: 5'- cGCgUGGGaagggcGUAUCGUuAUCU-CGCGGGa -3' miRNA: 3'- -CGgACCC------CGUAGCGuUAGAuGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 28046 | 0.67 | 0.918208 |
Target: 5'- -aUUGGGGCGaggauUCGCGAUgUGCGCc-- -3' miRNA: 3'- cgGACCCCGU-----AGCGUUAgAUGCGucc -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 31638 | 0.67 | 0.922143 |
Target: 5'- uGCCUcGGGGCuaggaggaauauguGaCGCGAaCUGCGCgAGGc -3' miRNA: 3'- -CGGA-CCCCG--------------UaGCGUUaGAUGCG-UCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 156278 | 0.67 | 0.923793 |
Target: 5'- cGCCUcGGuGGUgGUCGCGGUgaaCU-CGCAGGg -3' miRNA: 3'- -CGGA-CC-CCG-UAGCGUUA---GAuGCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 100077 | 0.67 | 0.929139 |
Target: 5'- gGCCUaGGGCGUaGCAuggCggcCGCGGGg -3' miRNA: 3'- -CGGAcCCCGUAgCGUua-Gau-GCGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 79210 | 0.67 | 0.929139 |
Target: 5'- cCCUGGGGCuaggcugcgUGCAGgcgGCgGCGGGg -3' miRNA: 3'- cGGACCCCGua-------GCGUUagaUG-CGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 133746 | 0.67 | 0.929139 |
Target: 5'- gGCgCUGGGaGCcuauaCGCAgacAUCUACGCcgAGGa -3' miRNA: 3'- -CG-GACCC-CGua---GCGU---UAGAUGCG--UCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 53294 | 0.67 | 0.929139 |
Target: 5'- gGCUucgGGGGCAaCGggaAGUCUGCcCAGGg -3' miRNA: 3'- -CGGa--CCCCGUaGCg--UUAGAUGcGUCC- -5' |
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24362 | 3' | -54.8 | NC_005264.1 | + | 137852 | 0.66 | 0.934244 |
Target: 5'- aGCCgcagGGGGUAcggggacaacCGCAgGUCU-CGCGGGa -3' miRNA: 3'- -CGGa---CCCCGUa---------GCGU-UAGAuGCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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