miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 31638 0.67 0.922143
Target:  5'- uGCCUcGGGGCuaggaggaauauguGaCGCGAaCUGCGCgAGGc -3'
miRNA:   3'- -CGGA-CCCCG--------------UaGCGUUaGAUGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 28046 0.67 0.918208
Target:  5'- -aUUGGGGCGaggauUCGCGAUgUGCGCc-- -3'
miRNA:   3'- cgGACCCCGU-----AGCGUUAgAUGCGucc -5'
24362 3' -54.8 NC_005264.1 + 96994 0.67 0.912384
Target:  5'- cGCgUGGGaagggcGUAUCGUuAUCU-CGCGGGa -3'
miRNA:   3'- -CGgACCC------CGUAGCGuUAGAuGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 108893 0.67 0.906323
Target:  5'- cGCCaUGuGGuGCG-CGCGGUCUaACGCGGa -3'
miRNA:   3'- -CGG-AC-CC-CGUaGCGUUAGA-UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 154947 0.68 0.900026
Target:  5'- aGCgUGGGGgaCGUCGUAcgC-GCGCAGa -3'
miRNA:   3'- -CGgACCCC--GUAGCGUuaGaUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 128309 0.68 0.900026
Target:  5'- uUCUGGGGCAguuuggUGCGGUCgaagGCGUAu- -3'
miRNA:   3'- cGGACCCCGUa-----GCGUUAGa---UGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 88227 0.68 0.893496
Target:  5'- cGCCaGGGGgAaCGUggGGUCagGCGCGGGg -3'
miRNA:   3'- -CGGaCCCCgUaGCG--UUAGa-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 21505 0.68 0.893496
Target:  5'- aCgUGGGcaccgcCGUCGCAGUggGCGCAGGu -3'
miRNA:   3'- cGgACCCc-----GUAGCGUUAgaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 68753 0.68 0.893496
Target:  5'- -gUUGGGGUcgC-CAGUC-ACGCGGGa -3'
miRNA:   3'- cgGACCCCGuaGcGUUAGaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 156278 0.67 0.923793
Target:  5'- cGCCUcGGuGGUgGUCGCGGUgaaCU-CGCAGGg -3'
miRNA:   3'- -CGGA-CC-CCG-UAGCGUUA---GAuGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 53294 0.67 0.929139
Target:  5'- gGCUucgGGGGCAaCGggaAGUCUGCcCAGGg -3'
miRNA:   3'- -CGGa--CCCCGUaGCg--UUAGAUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 100077 0.67 0.929139
Target:  5'- gGCCUaGGGCGUaGCAuggCggcCGCGGGg -3'
miRNA:   3'- -CGGAcCCCGUAgCGUua-Gau-GCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 79700 0.66 0.952292
Target:  5'- -----cGGCGUCGCuaGAUCUaACGCAGGc -3'
miRNA:   3'- cggaccCCGUAGCG--UUAGA-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 39487 0.66 0.952292
Target:  5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3'
miRNA:   3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 16492 0.66 0.952292
Target:  5'- gGCCUgcGGGGuCGagGCAcgCcgGCGCAGa -3'
miRNA:   3'- -CGGA--CCCC-GUagCGUuaGa-UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 13599 0.66 0.948133
Target:  5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3'
miRNA:   3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 9904 0.66 0.94374
Target:  5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3'
miRNA:   3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 137431 0.66 0.94374
Target:  5'- cGCCUGGcGCA-CGagauagCUGCGCAGa -3'
miRNA:   3'- -CGGACCcCGUaGCguua--GAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 67778 0.66 0.94374
Target:  5'- gGCUUGGGGUcgagaAagGCAGUCaguaucGCGCAGa -3'
miRNA:   3'- -CGGACCCCG-----UagCGUUAGa-----UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 137852 0.66 0.934244
Target:  5'- aGCCgcagGGGGUAcggggacaacCGCAgGUCU-CGCGGGa -3'
miRNA:   3'- -CGGa---CCCCGUa---------GCGU-UAGAuGCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.