miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 69853 0.79 0.351338
Target:  5'- uGCUUGGGGCAUCGCcc-CUACgGCGGa -3'
miRNA:   3'- -CGGACCCCGUAGCGuuaGAUG-CGUCc -5'
24362 3' -54.8 NC_005264.1 + 24919 0.66 0.94374
Target:  5'- -gCUGGGGUGaCGCGAUCUuauCGCccGGc -3'
miRNA:   3'- cgGACCCCGUaGCGUUAGAu--GCGu-CC- -5'
24362 3' -54.8 NC_005264.1 + 66261 0.66 0.94374
Target:  5'- uGCCa-GGGCcagAUCGCGcUCUGCGUcGGa -3'
miRNA:   3'- -CGGacCCCG---UAGCGUuAGAUGCGuCC- -5'
24362 3' -54.8 NC_005264.1 + 128930 0.66 0.94374
Target:  5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3'
miRNA:   3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 48063 0.66 0.948133
Target:  5'- gGCCaGGGaCAUCGgcCGAgcgGCGCAGGg -3'
miRNA:   3'- -CGGaCCCcGUAGC--GUUagaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 132626 0.66 0.948133
Target:  5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3'
miRNA:   3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 117001 0.66 0.952292
Target:  5'- uCUUGGGG----GCGGUCUGCGCGGc -3'
miRNA:   3'- cGGACCCCguagCGUUAGAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 158514 0.66 0.952292
Target:  5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3'
miRNA:   3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 143467 0.66 0.955839
Target:  5'- uGCCcgUGGGGCAUugggUGCGacuuggaccaaacGUCUGCcuCAGGg -3'
miRNA:   3'- -CGG--ACCCCGUA----GCGU-------------UAGAUGc-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 133746 0.67 0.929139
Target:  5'- gGCgCUGGGaGCcuauaCGCAgacAUCUACGCcgAGGa -3'
miRNA:   3'- -CG-GACCC-CGua---GCGU---UAGAUGCG--UCC- -5'
24362 3' -54.8 NC_005264.1 + 79210 0.67 0.929139
Target:  5'- cCCUGGGGCuaggcugcgUGCAGgcgGCgGCGGGg -3'
miRNA:   3'- cGGACCCCGua-------GCGUUagaUG-CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 60434 0.68 0.893496
Target:  5'- ---cGGGGUAuuUUGCGAUC-GCGUAGGa -3'
miRNA:   3'- cggaCCCCGU--AGCGUUAGaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 10092 0.74 0.560227
Target:  5'- cGCCgGGGGCAUCGCGgccguGUCcgugACGUGGa -3'
miRNA:   3'- -CGGaCCCCGUAGCGU-----UAGa---UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 124135 0.71 0.761673
Target:  5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3'
miRNA:   3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 117417 0.7 0.798742
Target:  5'- cGCUaucGGGGCuGUCGCGGc--GCGCAGGg -3'
miRNA:   3'- -CGGa--CCCCG-UAGCGUUagaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 103479 0.7 0.807653
Target:  5'- gGCCaUGGGucGCGUgCGCAGUCUgauccGCGaCAGGc -3'
miRNA:   3'- -CGG-ACCC--CGUA-GCGUUAGA-----UGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 71718 0.69 0.841623
Target:  5'- cGCgUGGGGC--UGCAGUCgGC-CAGGa -3'
miRNA:   3'- -CGgACCCCGuaGCGUUAGaUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 116503 0.68 0.865125
Target:  5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3'
miRNA:   3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5'
24362 3' -54.8 NC_005264.1 + 131460 0.68 0.879753
Target:  5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3'
miRNA:   3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 89830 0.68 0.886737
Target:  5'- cGCCgUGGGGCGccaggaGCuuUCUGCGguGu -3'
miRNA:   3'- -CGG-ACCCCGUag----CGuuAGAUGCguCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.