miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 136951 1.14 0.001999
Target:  5'- cGCCUGGGGCAUCGCAAUCUACGCAGGg -3'
miRNA:   3'- -CGGACCCCGUAGCGUUAGAUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 16126 0.8 0.292067
Target:  5'- aGCUUGGGGCAgaaUCGUcguucucAAUCUcGCGCAGGg -3'
miRNA:   3'- -CGGACCCCGU---AGCG-------UUAGA-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 69853 0.79 0.351338
Target:  5'- uGCUUGGGGCAUCGCcc-CUACgGCGGa -3'
miRNA:   3'- -CGGACCCCGUAGCGuuaGAUG-CGUCc -5'
24362 3' -54.8 NC_005264.1 + 10092 0.74 0.560227
Target:  5'- cGCCgGGGGCAUCGCGgccguGUCcgugACGUGGa -3'
miRNA:   3'- -CGGaCCCCGUAGCGU-----UAGa---UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 69274 0.73 0.621278
Target:  5'- uGCCaUGGGGCG-CGCGAaacaaggagcUUUGCGCAGu -3'
miRNA:   3'- -CGG-ACCCCGUaGCGUU----------AGAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 55369 0.72 0.662237
Target:  5'- aGCC-GGGccGCGUCgGCGGUCUACGCAa- -3'
miRNA:   3'- -CGGaCCC--CGUAG-CGUUAGAUGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 44879 0.72 0.662237
Target:  5'- aGCCUGGGGaggcgggccCGUCGUcGUCUgGgGCGGGa -3'
miRNA:   3'- -CGGACCCC---------GUAGCGuUAGA-UgCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 21115 0.72 0.682604
Target:  5'- uGCCagGGGGguUCGUGAUCacgaUACGCGGcGg -3'
miRNA:   3'- -CGGa-CCCCguAGCGUUAG----AUGCGUC-C- -5'
24362 3' -54.8 NC_005264.1 + 48683 0.72 0.682604
Target:  5'- aUCUGGGcGCgagucugcucGUCGCGGUCgcuCGCGGGa -3'
miRNA:   3'- cGGACCC-CG----------UAGCGUUAGau-GCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 158978 0.71 0.761673
Target:  5'- aCgUGGGGCAgCcCAAUCcccgGCGCAGGa -3'
miRNA:   3'- cGgACCCCGUaGcGUUAGa---UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 124135 0.71 0.761673
Target:  5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3'
miRNA:   3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 5108 0.71 0.761673
Target:  5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3'
miRNA:   3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 75473 0.7 0.780474
Target:  5'- cGCCUGGGGUggccaGUCGCGcguugagaCUAC-CGGGg -3'
miRNA:   3'- -CGGACCCCG-----UAGCGUua------GAUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 70502 0.7 0.780474
Target:  5'- cGUCUGGGaGCAagaUGCGGUCUaugGCGCuGGa -3'
miRNA:   3'- -CGGACCC-CGUa--GCGUUAGA---UGCGuCC- -5'
24362 3' -54.8 NC_005264.1 + 117417 0.7 0.798742
Target:  5'- cGCUaucGGGGCuGUCGCGGc--GCGCAGGg -3'
miRNA:   3'- -CGGa--CCCCG-UAGCGUUagaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 103479 0.7 0.807653
Target:  5'- gGCCaUGGGucGCGUgCGCAGUCUgauccGCGaCAGGc -3'
miRNA:   3'- -CGG-ACCC--CGUA-GCGUUAGA-----UGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 46259 0.7 0.816406
Target:  5'- cGCCUGgGGGCguuuagggGUCGCcgagCUGCGCAu- -3'
miRNA:   3'- -CGGAC-CCCG--------UAGCGuua-GAUGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 71718 0.69 0.841623
Target:  5'- cGCgUGGGGC--UGCAGUCgGC-CAGGa -3'
miRNA:   3'- -CGgACCCCGuaGCGUUAGaUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 116503 0.68 0.865125
Target:  5'- uCCUGGaaucGGCAaaacuacuUCGCGGUCUuCGguGGg -3'
miRNA:   3'- cGGACC----CCGU--------AGCGUUAGAuGCguCC- -5'
24362 3' -54.8 NC_005264.1 + 97829 0.68 0.865125
Target:  5'- aGUCUgacGGGGUucAUCGCGGaCUACGUAGa -3'
miRNA:   3'- -CGGA---CCCCG--UAGCGUUaGAUGCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.