miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 5108 0.71 0.761673
Target:  5'- cGCCUgGGGGCGagcUGgGAcCUACGUAGGa -3'
miRNA:   3'- -CGGA-CCCCGUa--GCgUUaGAUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 9904 0.66 0.94374
Target:  5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3'
miRNA:   3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 10092 0.74 0.560227
Target:  5'- cGCCgGGGGCAUCGCGgccguGUCcgugACGUGGa -3'
miRNA:   3'- -CGGaCCCCGUAGCGU-----UAGa---UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 12433 0.68 0.879753
Target:  5'- uGCUUGGaGGCGcggUGCGGUCUAaaggcccgGCAGGc -3'
miRNA:   3'- -CGGACC-CCGUa--GCGUUAGAUg-------CGUCC- -5'
24362 3' -54.8 NC_005264.1 + 13599 0.66 0.948133
Target:  5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3'
miRNA:   3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 16126 0.8 0.292067
Target:  5'- aGCUUGGGGCAgaaUCGUcguucucAAUCUcGCGCAGGg -3'
miRNA:   3'- -CGGACCCCGU---AGCG-------UUAGA-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 16492 0.66 0.952292
Target:  5'- gGCCUgcGGGGuCGagGCAcgCcgGCGCAGa -3'
miRNA:   3'- -CGGA--CCCC-GUagCGUuaGa-UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 21115 0.72 0.682604
Target:  5'- uGCCagGGGGguUCGUGAUCacgaUACGCGGcGg -3'
miRNA:   3'- -CGGa-CCCCguAGCGUUAG----AUGCGUC-C- -5'
24362 3' -54.8 NC_005264.1 + 21505 0.68 0.893496
Target:  5'- aCgUGGGcaccgcCGUCGCAGUggGCGCAGGu -3'
miRNA:   3'- cGgACCCc-----GUAGCGUUAgaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 24919 0.66 0.94374
Target:  5'- -gCUGGGGUGaCGCGAUCUuauCGCccGGc -3'
miRNA:   3'- cgGACCCCGUaGCGUUAGAu--GCGu-CC- -5'
24362 3' -54.8 NC_005264.1 + 28046 0.67 0.918208
Target:  5'- -aUUGGGGCGaggauUCGCGAUgUGCGCc-- -3'
miRNA:   3'- cgGACCCCGU-----AGCGUUAgAUGCGucc -5'
24362 3' -54.8 NC_005264.1 + 31638 0.67 0.922143
Target:  5'- uGCCUcGGGGCuaggaggaauauguGaCGCGAaCUGCGCgAGGc -3'
miRNA:   3'- -CGGA-CCCCG--------------UaGCGUUaGAUGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 39487 0.66 0.952292
Target:  5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3'
miRNA:   3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 44879 0.72 0.662237
Target:  5'- aGCCUGGGGaggcgggccCGUCGUcGUCUgGgGCGGGa -3'
miRNA:   3'- -CGGACCCC---------GUAGCGuUAGA-UgCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 46259 0.7 0.816406
Target:  5'- cGCCUGgGGGCguuuagggGUCGCcgagCUGCGCAu- -3'
miRNA:   3'- -CGGAC-CCCG--------UAGCGuua-GAUGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 48063 0.66 0.948133
Target:  5'- gGCCaGGGaCAUCGgcCGAgcgGCGCAGGg -3'
miRNA:   3'- -CGGaCCCcGUAGC--GUUagaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 48683 0.72 0.682604
Target:  5'- aUCUGGGcGCgagucugcucGUCGCGGUCgcuCGCGGGa -3'
miRNA:   3'- cGGACCC-CG----------UAGCGUUAGau-GCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 53294 0.67 0.929139
Target:  5'- gGCUucgGGGGCAaCGggaAGUCUGCcCAGGg -3'
miRNA:   3'- -CGGa--CCCCGUaGCg--UUAGAUGcGUCC- -5'
24362 3' -54.8 NC_005264.1 + 55369 0.72 0.662237
Target:  5'- aGCC-GGGccGCGUCgGCGGUCUACGCAa- -3'
miRNA:   3'- -CGGaCCC--CGUAG-CGUUAGAUGCGUcc -5'
24362 3' -54.8 NC_005264.1 + 60434 0.68 0.893496
Target:  5'- ---cGGGGUAuuUUGCGAUC-GCGUAGGa -3'
miRNA:   3'- cggaCCCCGU--AGCGUUAGaUGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.